Gene detail

Detailed information of XP_032236685.2 in Nematostella vectensis

Genomic Location: NC_064039.1:340489...351589
NR annotation: XP_032236681.2, tyramine receptor 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032380794.2

GTCTAATCGCAACTTCCCCATGCATACAAGACACACCGGCGCAGTTGGGTCTCAGTGAGCGCTCGTCGGTTGACGATTGACTTGATTGATTCGCCTCGGATGTAATTATAGTGATGACGAGATAAAACATTTCGGGCCAGCGACCTATCAGCGGCCACAAGCTGACAAGCCCGTCCAGATACCACGTGACTTGAGACGGTTCAAGCCGATTACAAGTTATTTACCAGCAGAAGGTTTGTCCGACCGCGCACGGAAACAGACAAGATAGGACAAAGCACAAGGAAAACAAGGACAGAATAACTCCAAAAAGGTCGCACGTAAAGATAAACCAGACCACCTCGGGAGAGGGATATCAAGGCCTCAAGCAGACGGGAAACAGTGGCGACTGAACGCTGAGTCCGAAAGCAGGACTGCAAAGATCAAATAAAGACATTCATTGAGGATCAATTCAAGGGTTCTGTGAGGGCCAATATAAGGCCACGTATCCTGGCGCCATGATGAACACTAGTGCCAACTTGACGACGGGGATGCACGGGCTAACAACGATAAGCACGACTCCCGAAAACCTCGTGGCCGCCGTGTTCGTGGCTATTCTGATGTTCTTCACACTTTTCGGAAACATCATCGTCATCTCTTGCTTCTACACCTTCCAAGATTTGCGTACGATTTGTAATTACTTCGTGGTGAGCCTTAGCGTGGCGGACATTCTCGTGGCGCTGGTTGCTATGCCATTCTGGCTGCACGTTCAAGTCATGAACAATATGTGGACTCTGAGCAGAACCTTACGCCGGTTCTGGGACTGTATTGACATCCTTTGCGGCACTGCGTCCATCATGAACCTCACTGCAGTAAGCATCGACAGAATGCTAGCCATAGCAGTGCCGTTCCGCTACCCGCACATCTTGACCCCTAAGCGCGCAGTGGCGTTGATCATCTGCGTCTGGGGGTACGCCATGTCAGTGGGTGGGGCAAGGGTAACTGACTGGCCCGGTCGCAGCTTTCTGTACTTCGTATCGGTTGTCTGCTTCTTCTTTCCACTaaccattgtcatcatcatgtACATCGTGATCTTCGTTGTTGTGAGAATACAAGTCAAACGGATAGGCAAAAATAGCATCGTGCGAGCAAGCGAGATGAAGGCGGCCAAAACCATCGCGGTTGTCATCGGGGGCTTTCTCATTTGCTGGCTTCCCTTCTTCACCATGGTGCTTGGGTATGCGTACGACCCCTCGTTTGATCCGCCCTTTGCATTGTTCAATGTAATCAAATGGTTGGAGTACTTCAACTCTTGCCTGAACCCTTTAATCTACGCGTGCATGAATCGCCTGTACCGCAGGGCTTTTCGGAGACTCTTTAAAAGGTGTTACCTCAGGTTGTCCAACCGAGCGGGGGCTTCAAATGTGCTTCAGTACCTTAGTCAAGGACCGCGCGGCTCTTTGCTCACGACTACTGTCTATGATACCAACAGTGGACCGCAAGAACGAACTAAAGTATAGCGCGCGTGGGTCTTTGCTCGCGACTACTGTCTATGATACCATTAGTGGACCGCAAGAACGAACTAAATTATTGTCCGCGTGGGTCTGCTCACGACTACTATCTATGATACAATTAGTGAACCGCAAGAACATACTAAAGCACAGCCCGCGTGGGTCTTTGCTCACAGTTACTGTGTGTGATGCCAACAGTTAACTACAAGCATGAACTTTAAGACATGTTCCGCACGGAACGCGACGCCGCGAATATCAGCGCACGCATAATCTCCCTTCGAACACGCCCTGGACTCTGGCCTGACTCACTACTGAGAAGCGAAAGCATTGAGTGTGTGCAGGAAGTGTGAAAGCGCGACTCTTTGATTAAAGGCAAACTATCCAAAACCTGACACTTATTGGTTTCCCTTAATTTCGCGTTATTTTCTACTAAATAAAATGCCGGTGGGAACAGTTGTAAGGCGTTTGGGGGTTCGAGCGAATGCTTGGTATCATTAGATATATGCCTGATCGATCACAGTAAGACTGCTGCTCACTGATAATCGTGAATAAAGCTATCGAACATGGGAAGAAAGGAAGTGCACTGACGGTTTCCGTTTGTCTTTGTTTGAAAATTATACGAACAGAGCAAAGTGGTTGGATAGCCAAATCGAAACGTTGGGGTATGCCACGGCCGACGACGGCACAAAGCTAATTGAATGGAGAACTAAATGGCAGCGCGTAAAAATGCACTCTCGGGACAATTTGATAGACGCCGAAAACATAACACATGATTCTAGTGTTTTATTGAGGACCTTACGCCTAAAAAGACCGCATTCCTTTTTTTGTCTCAGACGGGAGGGGAGCCATGAGAGATCGGCTCATCCCAAAGTCGtgattttctctttttgtcCCCTACAAAAGTCTCAGATGTTATAAGTGTATACTCCCACTCCAAATGAGGTTGCTCTCCGAAAAGCAATGTGTTGTAACCCGCAATGGTTCATGGGTATCGAATAAACATGTATCATTATTTATATACCTGTAAATATTGGCATGGTTTTCAGGAAAAAGGATTCAACCATTTTAACGATACCCAGAAACATCTTCGGGCTACGGCACAAGGAGTGTATCACGTTAGTTTCATGGTGCCATTTTCACCCAAGTCTCAAGTTGgagatttttttttgaaatcaCAAAAAAACGAATTTAAGTACGCGTAAAAATTAATCATAAGGTAACCCTAGGATTTCTTATACTTATCGGTTGAGGGAAATTGCGTGTAAATTGTAAATATAACTGCTGTTCATGTACACAATTCCACAAAAAAAGAAGTTCTTTAAATAGGATAGACTAGTTGGCTTCTGAATACAATGTCAAGGTTGAGCAAAGTCTTATCGAAACGTGCGGTAAGTACTGTTTGAGCTTGTCAAAGTAACTCGCAACGCGTCTTTAAACGAACGAGAactgttaaaataataaaacttgaAGAGGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97718	Alpha-1A adrenergic receptor OS=Mus musculus OX=10090 GN=Adra1a PE=1 SV=3
O02824	Alpha-1A adrenergic receptor OS=Oryctolagus cuniculus OX=9986 GN=ADRA1A PE=2 SV=1
Q9WU25	Alpha-1A adrenergic receptor OS=Cavia porcellus OX=10141 GN=ADRA1A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000224 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24248 all species →	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0004937 all species →	Molecular Function	alpha1-adrenergic receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007200 all species →	Biological Process	phospholipase C-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007204 all species →	Biological Process	positive regulation of cytosolic calcium ion concentration	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0071880 all species →	Biological Process	adenylate cyclase-activating adrenergic receptor signaling pathway	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032236685.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032236685.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

21.6Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	1.97	3.07
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.03	2.53
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.77	6.51
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.49	9.22
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.16	2.90
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	5.86	9.53
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.91	2.89
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	6.98	8.16
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	11.71	15.87
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	17.13	21.60
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	13.60	19.95
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.50	3.87
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.95	4.67
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	3.93	6.85
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.73	5.74
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.86	14.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.07
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.84
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.53
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.87
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.69
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.51
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.18
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.62
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.22
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.62
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.62
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.90
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.88
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.69
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.53
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.06
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.89
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.83
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.16
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.40
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.38
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.87
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.45
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.81
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	21.60
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.90
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.90
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.95
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.39
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.46
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.87
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.63
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.67
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.95
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.23
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.85
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.95
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.74
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.44
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.59
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.