Gene detail

Detailed information of XP_032236715.2 in Nematostella vectensis

Genomic Location: NC_064039.1:145688...157430
NR annotation: XP_032236715.2, rhotekin isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032380824.2

TGTGGTCGAGTCCACGGCCTTCCAGCGGTCATACCCAACCTCTCAATCGGAAACTTCCGAATAAACATCTTCGGAATCGAGCATCATAAAAGAAGATGGCGGTCATACGAAGAAAGAGTTGCGTCTCTCTCTTATATACCCTCCCATACGAGTAAGAGAGACAATTCCTGCCTTTGTTGTATGCTGAATGAAATTGTTCAaccattttcatttaaattttCAGAGAATGTATCTTATATAACTTTGAACCATTACAGCTGGCGGGtgcttttactttttttttcctttgttctATTCTACTAAAGTTATTAACGTAAGCTTAATTGGTACTTATTTTACTTACTTTAATGGGTACTTCTTAGCATATACAGTTTTATTCACAATGCAACATGTCTTTTATACCTGCTTTTCTATATCAATTAATGTTGAGGGTTTACATTGATATATACTCGTCATCATAAGTAACTTATTATAAGTACTTTaaaattttcaattaaaactCACGTCTAGTCTACAGAAATTATTACATCATGaattgacatttttttcagataggtattatatgatacctatggctGCGCAACCCCTCCACACACTCCACTCCCCCCTCAGCTAATTCTGAATACGCGCCTGCTAAACGTTTACGTTCTTGTTATGATTACCAGAGATAAAACGCAACACAACGAACCTGCACGTTCCTAAGTCGAGATTAGGAAACTAATTGGCTGACTCGCTCGTCCGTTCTTgctcattattattttttttaatctgccttcatataaattaataaacactGACTAAATTGAGTACACTAAAGACTGGATATTTATATGATCTGTCAACACACACAAAAGTCGgatcgccatcttggatttctaCGACAATCTCGCACTTTCCTGAGATGGTGATCGGAAAATTCCGGCTGTGAGGTTGGGTATGACCGCTGGGAGTCCGCGGACTCGACCACAATCTACGTCCGTGTTTATTCGGAAATTAGCTCCGTAGAAGACCCTGGAAACGAGATGTTACGCTACATCAGAAGTAACCGGAAGTACGTGTGGGCTTCCTGTCGCGTGATTTTTTCCGAGGCCTGGTGCCGAAACTCAGAAGTCAgagggaaagaacaaggaaaataaaatggaGTCGGAAGAGCAAACGACTAAATGGGATGCTTCAGCGCTCAAGCAACTGGATGATCATGAGATACAGAAGAAGATTGATTATGAGGTGCGCATGCGAGAGGGCACGGTCAAGCTACTTGCCGCATGTCATGAGGAAGAACAGGCATTAGAAGCCTCTAAAAACCTACACACAATCAATGCTAGGATACTAGCTTTAATGAGTTTATTGCAAAGGCACAGAGCAAAGTCTGTAATCTCAAGAAGAAGAGAGTCAAGCAGCTCCAGTGTTGAGCATGAGAAGAGGAATGGTACAATAGAACCGAGCAAGGCCAAGGTTTCTCTGTCAGATATCCGTATACCCCTCATGTGGTCACCTGATGATCACACAAAAGCTAAAGCAGAGCAGCATGTGTTTTATGTCTTCTGTCTTCTAAAAATGGACGGGCAGGTCCTCGACACAACTATGGTGCCAACAGATGAGTCTGAGACAGATATACAATTCAGTGATGTAATTGTTTTTGAAAATGTACACTCAGACTTTAAGCTTGAAATAGAAATATACTACACAATATCTTCTGAAAGCGCAGCTAATAGAAACCTAGGAATCAAGAAGTCACTGAGGCGAACTCTTTCTGGAGCAGAGGGCTTAAAGTTTGTCCTTGCAGGACACACACAGTTGACAGTTGACCATCTTGATGACAAGATAAAAACTTATGACTTAAAAACAGGGTTGGTTGGTGCAAGTGCCACCGCCTCTACTGTGTCAACAGAAGAGACTCATTCCCCAGAGCTGGCATTATGGGGTCAAATCTGCTGTAGGCTGGCTGCTCAGCCCGACTGCTTTGGTCATGAAAGAGTAAAGGGATACCTGAATGTGCAGTGCATTTCTAATGGGCAAAACTCGTGGACCAGGCTTTGGTGTGTCCTCAAGCACGCCTCATTGTCGTGTTGGGAGAAAGAGGAAGACTCGTACCAGGCCCCACCAAAGGACATCATCGATATAAAAGTGCACATGGAGGTAAAAGATTCAGTGAGCCCCCTCctgaaacaacaaaacatCCTGATTCTGACGAGCCCCACGCATGAAAAAGAGCCTGTTTTATCTGCTGaatcagacgaagagtttgtAGTGTGGAGGGAAGCTTTAAAGCAGGCTGTCTGCGATGTGAACGCATGGAAAAAGGGATGTAGAACAGAGATGAAAGTCGAGTGTCCTTCAACCCGGAAGCTCCCCCCGGCCCCAAAGAAACTGTACGATTCTATAGAAGTCCTTCTTTCACCATTGGATGAATCTGATGAGAACATCCCTCTCCCCCCTCGACCGGAACTAGCAGATGTGAACAGCGACTCGGCGAGTACCATCAAGTGCACGTATGACGTATGGCAGAGACGAAAACCGGAGAGAAGCAGCTTGCGAGAAAAGAAAACCCAACAAGACAACAGCGAGTCCTCAATATAAGAATTTCCCCTGCATTAACATTAACGGTTttatattttatctttttctcGGAAGGATTCTATCTTTCAGGATGAAAGCACGGAATCCCCTTCATGCAGTTCTTTCGACATGTTCTTTTATACATCGTTTTCGGCTCTGCAGGCGAAAGGGAGAGGGCGCTTGAACGGCGTTTTGTTTGTTGTCAAGAATTCGCTTGTGTTCTAGTTAAAAATTAACAAAGTTGTTAGTTATCGTTTAGAGATCCTGTGAAACTCGTAAAGCGAgtgtaaacagcgccagcatttgGAACACTGTGTGTTCTAACCGGGTTTCCTGTCCATggcagagccgtagcaggttATGTAAGtttggaggggcacaatacagaaacataaaggtggcgcgccgaggttgttttttggctaaacagcttATGCTATGTTCCCTATAGAAGACTCATTTTCGGCGCgagtttcgtttttttttttagattttattaatacatctatTCTTTATCAGATTCCGCTAGATTCGCTCACAGACGGCTCAAAAAAGCCCAGTCTGATTGAAAAGggttaagaaaatattggggagggggtggcaTATCCACGCACCTACTGGTCATTCCCTTATAATGTTTGGAAAAATtgatgggggtggggggtggcaCAGCCACATGCCCACTACggccttgctacggccctgcatgGAGATAAAATGTGAGGCAACACTAACCCACCACAGGAAGCTCGAAAGAGCTCTTTAGGAGCGCCCgaaaagtacgctggatcttcgagcatgACAACTAGCATGAAAACGCATGAGGCTAGGATGTTTAAAGACGCTTTATTACCATGGTGACGTAGTCTCCTTCGCAGCCGTCCTTACGTGGGAAGGGATTTTAGACTGACAATTGGTTTCCCTAGGGTCTCACATAATCTGGCTGTGCACATGTGCACGAGACTGTGTTACCTTTACAGTTATAAAAGAGATTATATAGTTATAGTCCATTATAATAATTGCCAAAATTATAGCTAGATATGGCAAAATAGGAAAAGGACGGTTACGCTGAGatgaataaataacaaagaaTACGCAACTTGATTATATTTTTCCTGCTTTGAAAACCCTAGAttaatttacaaaaaagtaTAAATTCCGTACACTATCCAAGGCCCATAGACATTAAATTATATCCATATTTAAGTagatattttttgtatttaaaggAACATTAAAAATAGTTAATTAGCCTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BST9	Rhotekin OS=Homo sapiens OX=9606 GN=RTKN PE=1 SV=2
Q8C6B2	Rhotekin OS=Mus musculus OX=10090 GN=Rtkn PE=1 SV=3
Q8IZC4	Rhotekin-2 OS=Homo sapiens OX=9606 GN=RTKN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002922 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08174 all species →	Anillin	Cell division protein anillin	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR051364 all species →	Family	Cytokinesis and Rho signaling-related protein	Interproscan
IPR012966 all species →	Domain	Anillin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21538 all species →	ANILLIN/RHOTEKIN RTKN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000915 all species →	Biological Process	actomyosin contractile ring assembly	Interproscan
GO:0005826 all species →	Cellular Component	actomyosin contractile ring	Interproscan
GO:0031106 all species →	Biological Process	septin ring organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24024	RTKN; rhotekin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032236715.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

13.6Max TPM

9.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.01	13.63
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.71	10.21
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.86	7.45
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	10.23	12.18
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.54	7.54
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.56	12.01
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	10.65	12.78
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.76	12.25
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	11.62	12.47
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	11.01	11.91
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	10.53	12.67
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.89	10.97
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.75	10.12
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	8.65	13.03
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	9.75	11.05
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.94	11.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.63
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.82
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.60
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.21
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.84
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.07
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.45
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.75
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.38
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.18
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.37
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.15
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.54
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.54
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.55
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.01
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.67
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.78
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.65
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.53
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.25
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.38
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.65
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.47
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.23
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.17
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.91
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.77
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.34
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.67
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.49
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.43
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.69
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.12
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.66
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.47
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.03
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.91
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.05
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.13
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.07
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.83
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.