Gene detail

Detailed information of XP_032236743.2 in Nematostella vectensis

Genomic Location: NC_064039.1:22647...28476
NR annotation: XP_032236743.2, DNA mismatch repair protein Mlh1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5511465

ATGGCGGACGTACCTTCTATCAGAAAACTTGATGAAACCGTTGTAAATCGAATAGCTGCTGGTGAGGTTATCCAGCGACCTGCAAATGCACTTAAAGAGATGATAGAGAACTGCCTTGATGCTAAGTCTACATCAATTACGGTAACAGTGAAATCTGGCGGTTTGAAATTACTCCAAATCCAAGATAATGGCTGTGGGATCCGCAAGGAAGATATGCACATAGTTTGCGAACGCTTTACTACCAGTAAACTCTCCAAGTTCGAGGACTTGAGTAGTATTTCTACTTATGGTTTCCGTGGGGAGGCGTTAGCGAGTATAAGTCATGTCGCTCATGTTACAATCACCACCAAAACAGCTCATTCAAGCTGCGCCTACAAAGCGAGCTATTCGGATGGCAAACTAGTTTCCCCAAGACCAGGGCTACCTGCTGAGCCAAAGCCTTGTGCTGGAAATAAGGGCACCCAGATAACAGTAGAGGATTTGTTTTATAATGTAGCAACTAGAAGAAAGGCTCTGAAAAGTCCCGGGGAAGAATATTCTAAAGTGGTTGATGTTGTTAGTAAATATTCAATTCATAACACAGGAGTTGCGTTCACCCTAAAAAAACAAGGGGAAGGCACTGCAGATGTACGAACAACTTCTACTGCATCTTTGCATGACAATATTCGAGCAATATATGGAACAGCAGTTGCAAGAGAACTCGTAGATATCGATTGTGATAATAGCAGGCTTGGTTTCCATATGAAGGGGTGCATCACAAATGCGAACTACTCGGTGAAGAAATTGATCTTTTTGCTTTTTATCAACCATCGGCTAGTAGACTCAACGGCACTCCGCAGGTCTTTGGAGACTGTATACGAGGCTTATCTGCCAAAGGGGACTCACCCCTTTGTTTATATGAGCTTGCAGATTACTCCAAGTAATGTTGATGTTAATGTCCATCCCACCAAACACGAGGTCCACTTCCTTCACGAGGATGCCATTGTAGAAGCTGTACAGAAATGTGTGGAAATGAAGCTTTTGGGCTGCAACACCTCACGCACATTTTACACCCAAGCACTTTTACCTGGAGTTGCTGGAACCAAGAGTTCTGAGTCAGCAGATGTTGCAGGAAAGAGTTCTTCAGCAAATGGGTATGCTCATCAGATGGTACGCACAGATAGCCGTGAGCAGACTCTCCATGCTTTCATCAAACCAGATGGAAAATCAGTAGCAAACAGGAACTCATCAGGGGATGATGCTCCATCCATTTCTCCTACAAACAAAAGGAGTAATGAAGGCAGTGGAACAGATCCAAAAGTCATTGACAAAGAAACATTCCAGGCTCAATACAGGAAACCTAACTCTGTTGAACCATCCATTTCAGAAAACAAGAGAGCAAAGCTAGTTGAAGAGTCTAATGGCTTCAAAAGGCAAAAATTAAACCAATTCCCACGAAGGGAAGTCCAACTGATCAGTGTCCAGAAACTACGCGAGAAGATTGACAAAGCAGAACACAGGGGTCTGAAGGACTTGTTTGAGGAACACAAATTTGTTGGCTGTGTGACACCCTCACAAGCGCTTGTCCAGCACAATACAAAACTCTACCTGGCAAATATTCACAGCCTGTCCAGGGAGTTATTCTATCAAATAATAATGTTCCAGTTTGGGGACTTTGGGTTTCTAAGGCTTTCTGAGTCTGCTCCGTTGTATGAGCTCGCACTGCTTGCTCTGGAGAGCCCCGAGAGTGGATGGACCCCAGCAGACGGAGCAAAGGAAGATCTTGCTCAATACATAAAGGATTTCCTGATGCAGAAAGCTGAAATGCTTCTTGATTATTTTTCTCTTGAGATTGATGGGGAAGGGAATTTATTGTCTTTACCACTCCTGCTGGAGGAATACGTGCCAAATCTCAATGGACTGCCCATGTTTGTTCTTAGACTTGCAACTGAGGTGGAGTGGGACTCAGAACTAGAGTGTTTCGACACTTTTGCCAAAGAATGCAGCAGATTCTTCTCATTCAAGCCAGATGTAAACCCTGACGACGATTTAGATCAAAATGAAGCATCTTCCTCGGACTGCAAGAGTGCTTCTGATGAGTGTAAAATAAGTGTTGATGACCCTGGCACAGATGTGCCTGGAAGTGGCATTGATGGGCCTGCAACTAACTCACATGGGCCTGGTAATGGCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTTCTGGCAGGAAAGGGCCTGGGACTAGCCCCGATGGTCCTGGTACTGGCAGGAAAGGGCCTGGGACTAGCCCCGATGTGCCATGGAAGTGGTCTGTGGAGCATGTGTTGTTCCCTGCCTTCCGGTCAGGCCTTGTACCTCCCACTCGCTTTGCTGAGGATGGGACACTGTTGCAGATTGCCAGTCTAACAGAGCTGTACAAAGTGTTTGAAAGATGTTAG

Transcript

rna-XM_032380852.2

GTCTCCTGTGGTTGACATTTTGCGCGGGAAGtctttcaaaatggcggacgtaCCTTCTATCAGAAAACTTGATGAAACCGTTGTAAATCGAATAGCTGCTGGTGAGGTTATCCAGCGACCTGCAAATGCACTTAAAGAGATGATAGAGAACTGCCTTGATGCTAAGTCTACATCAATTACGGTAACAGTGAAATCTGGCGGTTTGAAATTACTCCAAATCCAAGATAATGGCTGTGGGATCCGCAAGGAAGATATGCACATAGTTTGCGAACGCTTTACTACCAGTAAACTCTCCAAGTTCGAGGACTTGAGTAGTATTTCTACTTATGGTTTCCGTGGGGAGGCGTTAGCGAGTATAAGTCATGTCGCTCATGTTACAATCACCACCAAAACAGCTCATTCAAGCTGCGCCTACAAAGCGAGCTATTCGGATGGCAAACTAGTTTCCCCAAGACCAGGGCTACCTGCTGAGCCAAAGCCTTGTGCTGGAAATAAGGGCACCCAGATAACAGTAGAGGATTTGTTTTATAATGTAGCAACTAGAAGAAAGGCTCTGAAAAGTCCCGGGGAAGAATATTCTAAAGTGGTTGATGTTGTTAGTAAATATTCAATTCATAACACAGGAGTTGCGTTCACCCTAAAAAAACAAGGGGAAGGCACTGCAGATGTACGAACAACTTCTACTGCATCTTTGCATGACAATATTCGAGCAATATATGGAACAGCAGTTGCAAGAGAACTCGTAGATATCGATTGTGATAATAGCAGGCTTGGTTTCCATATGAAGGGGTGCATCACAAATGCGAACTACTCGGTGAAGAAATTgatctttttgctttttatcaaCCATCGGCTAGTAGACTCAACGGCACTCCGCAGGTCTTTGGAGACTGTATACGAGGCTTATCTGCCAAAGGGGACTCACCCCTTTGTTTATATGAGCTTGCAGATTACTCCAAGTAATGTTGATGTTAATGTCCATCCCACCAAACACGAGGTCCACTTCCTTCACGAGGATGCCATTGTAGAAGCTGTACAGAAATGTGTGGAAATGAAGCTTTTGGGCTGCAACACCTCACGCACATTTTACACCCAAGCACTTTTACCTGGAGTTGCTGGAACCAAGAGTTCTGAGTCAGCAGATGTTGCAGGAAAGAGTTCTTCAGCAAATGGGTATGCTCATCAGATGGTACGCACAGATAGCCGTGAGCAGACTCTCCATGCTTTCATCAAACCAGATGGAAAATCAGTAGCAAACAGGAACTCATCAGGGGATGATGCTCCATCCATTTCTCCTACAAACAAAAGGAGTAATGAAGGCAGTGGAACAGATCCAAAAGTCATTGACAAAGAAACATTCCAGGCTCAATACAGGAAACCTAACTCTGTTGAACCATCCATTTCAGAAAACAAGAGAGCAAAGCTAGTTGAAGAGTCTAATGGCTTCAAAAGGCAAAAATTAAACCAATTCCCACGAAGGGAAGTCCAACTGATCAGTGTCCAGAAACTACGCGAGAAGATTGACAAAGCAGAACACAGGGGTCTGAAGGACTTGTTTGAGGAACACAAATTTGTTGGCTGTGTGACACCCTCACAAGCGCTTGTCCAGCACAATACAAAACTCTACCTGGCAAATATTCACAGCCTGTCCAGGGAGTTATTCTATCAAATAATAATGTTCCAGTTTGGGGACTTTGGGTTTCTAAGGCTTTCTGAGTCTGCTCCGTTGTATGAGCTCGCACTGCTTGCTCTGGAGAGCCCCGAGAGTGGATGGACCCCAGCAGACGGAGCAAAGGAAGATCTTGCTCAATACATAAAGGATTTCCTGATGCAGAAAGCTGAAATGCTTCttgattatttttctcttGAGATTGATGGGGAAGGGAATTTATTGTCTTTACCACTCCTGCTGGAGGAATACGTGCCAAATCTCAATGGACTGCCCATGTTTGTTCTTAGACTTGCAACTGAGgtgGAGTGGGACTCAGAACTAGAGTGTTTCGACACTTTTGCCAAAGAATGCAGCAGATTCTTCTCATTCAAGCCAGATGTAAACCCTGACGACGATTTAGATCAAAATGAAGCATCTTCCTCGGACTGCAAGAGTGCTTCTGATGAGTGTAAAATAAGTGTTGATGACCCTGGCACAGATGTGCCTGGAAGTGGCATTGATGGGCCTGCAACTAACTCACATGGGCCTGGTAATGGCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTAATGCCAGGAAAGGGCCTGGGACTAGCCCAGATGGTCCTGGTTCTGGCAGGAAAGGGCCTGGGACTAGCCCCGATGGTCCTGGTACTGGCAGGAAAGGGCCTGGGACTAGCCCCGATGTGCCATGGAAGTGGTCTGTGGAGCATGTGTTGTTCCCTGCCTTCCGGTCAGGCCTTGTACCTCCCACTCGCTTTGCTGAGGATGGGACACTGTTGCAGATTGCCAGTCTAACAGAGCTGTACAAAGTGTTTGAAAGATGTTAGGGATGATACCCCAATGAATAAAGCGTTCATTTTTTTAAGCCAAGATATTTAGGTGGAATTTTACATTTAGTGTTTTTCAGTTGTCTTACAGCACTGTGGGTTCAAGAAATGTTACAATATATACCAAGCATTGACAGCAGAGAGAGCAACACCATACAACTTTGTGAAGCAGTGCAATGGTTGTCATAAATTTGACGTACAGGATAGAATAGGAATAAACTGACTAACCATATGGTCCGTACTCCATAGGATGGCTCAAGCTCTCAACTCGAATGTTACAATATCACCAGGCACTCATCACAGACAGCAGACAGACACATAACTAGAATTTCTGGGGGGCTACAGCTGCAGATTTATTAAAGATAGTATCACTGGTATTTTAATTAACAGAGTGTGTGTCACATGGTGTAATATCATGGGCCTTTTTTAATACATTTCATGTAGAAGAACAAACTGGATTTCTGATTATTACAATAAATGTTAACAGTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40692	DNA mismatch repair protein Mlh1 OS=Homo sapiens OX=9606 GN=MLH1 PE=1 SV=1
Q9JK91	DNA mismatch repair protein Mlh1 OS=Mus musculus OX=10090 GN=Mlh1 PE=1 SV=2
P97679	DNA mismatch repair protein Mlh1 OS=Rattus norvegicus OX=10116 GN=Mlh1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01119 all species →	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF16413 all species →	Mlh1_C	DNA mismatch repair protein Mlh1 C-terminus	Domain	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038973 all species →	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR014762 all species →	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR002099 all species →	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR013507 all species →	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR032189 all species →	Domain	DNA mismatch repair protein Mlh1, C-terminal	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073 all species →	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300 all species →	Cellular Component	mismatch repair complex	Interproscan
GO:0032389 all species →	Cellular Component	MutLalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08734	MLH1; DNA mismatch repair protein MLH1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032236743.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

3.3Max TPM

1.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.90	2.69
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.89	2.79
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.88	0.97
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.66	2.17
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.34	1.56
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.37	1.11
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.41	2.27
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.09	2.61
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.80	1.36
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.50	0.80
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.15	1.16
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.75	3.13
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.91	3.31
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.77	2.32
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.98	1.71
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.35	1.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.69
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.79
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.57
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.32
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.97
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.87
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.81
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.17
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.58
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.25
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.56
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.52
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.95
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.11
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.27
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.97
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.61
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.14
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.52
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.36
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.04
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.80
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.70
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.16
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.15
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.15
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.13
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.13
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.31
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.43
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.32
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.71
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.23
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.04
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.