Gene detail

Detailed information of XP_032237044.1 in Nematostella vectensis

Genomic Location: NC_064044.1:12922327...12927424
NR annotation: XP_032237044.1, 60S acidic ribosomal protein P1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032381153.2

TCGCGCCGATTTCTTCGTTCTTTCGCCACAACGTGAAATCAGGTGTAGTGTTCTCGTAGAGCTAAGGCCTTGAAATCCAGCTGAATCCTCGCTTTCAAGGCGACCTACATCCAGTTTTTACAAACATCCTTAAAGTAAAATAACCAGTGAATACAATGGCATCTACATCTGAGCTTGCTTGCGTCTACAGCGCTCTTATTTTACACGACGACGATGTCGCTATAACCGCTGACAAGATTGAGACCCTCGTCAAGGCAGCTAAGATCAATGTTGAGCCATTCTGGCCCGGCCTTTTTGCCAAAGCGTTGCAGGGCCACAACATTGCAGACCTGATCCTTAGCGCAGGTGCCCCAGGCGCTGGAGGTGCTGTCGCTGCCGCCCCTGCGGCTGGTGGTGAGGCCAAGGCTGAGGAGAAGAAGGAGGAGGCCAAGAAGGAGGAGTCGGAAGAGGAATCTGACGACGACATGGGCTTTGGTAAGAGTGATTCTAAAAGTGGTGTGATGAGCCACATATCGTATTATTAGCACATCAGCATATCTAATGCTTCGAGAAAATAATGGAAATATTGCGATATTCAAGCGCTTTCGGGTCTCTAAGAATCCAACATGGCGTTCGAGCGAGACAAGTGATTTCACTACAAGGCATTGTTCTATTGGGTAGGAGAGCTAGAGGGCTTTTTCTCTCGTGTGTGAAAGCTGGGTGGTATAGGGAAATATGACAGTTTTTATGCTGGGCGTTTCAGGGCGGTATAGGAGCGAATGGGTTAAACCACCATTTCTTAGCCAAGCCTAGAGACAACAAAAGTTTTGTGTGAATTGATAACAGGGGTAAATGCCTCTcgattaaaatataaaataaaaacaaagtctTATCAAAGTCATCACATACTCTGAAACCCTGGGGAATTTTTCTCTAATGTTTCACTCTTGGAAAAATAACCCCTTGGGAACAGTAAAAAGCAAACTTGGCAAAATAATAACAGCCTATGGTGAGCTGTGATTGGTCAACCTCCCAAGGTTATAGCCGTGCTTCCCAAAAAAATGCACCAAAAGTCTACATAACCGCTCTCTATTGGCTAGAGATCAAATATGGCATTTAGCATGTGAAGAGCTAATTCCTGACCTCATTTCAGCAAAAACACACGTTTAGAGTGTCTTCATTGAAGCCAGACCAGCTTTTGGTCCTAAAGGTGTTTTACAAACGACAGGATGTTTTTGCTCGACTCCCCCCAAGGTTTGAAAAGAGATAAATTTTCAATCTATGCCGAAAATGTGTGACATTTTGAAAGCGAAAGTTCAGCAGGGAACCCGATAGTTCTTGTAACTTGTCCTCTCCAGTCCATAATCCGAGACGGCCTATCTGAACTCATTAGGATATGTACTGCAGATATTTCCAACCCAAAGGACACTGACATTCTAGTCCAGGGAAAAGCGAGGATCATGCTCGGTAGCCCCGAGTCATTCGGCAGTGAAGCGACACAGCTATTACTTGGACCAGAATTTGAGCCTACAGAGAGAATGTCGTAGATCCTTGGCTTGCAAAATGTGCAAGTAAAGTCCTTATAACCATCTTGTTGTGATACATTCCTTCCAGTAAAAATCAAGGAGAGTAGTTCTCCAAGCAATGCGATCCAAATAGCTCGTGCCCTTTTTATTATCTGAGACTGTTTGCAATAATTCCTGATTGCCTTACATTCTGAGTAGAAAAGGTTAACCCATTTTTCTTGCATTACAAAGGACAGAGCTGGCGAAACGGCAAACATCTACACGTTTAAGATTTCCCACAGTGATTTGCGTCCAAAAAAGATTGATGGATGACAGCTTTTGACATGTTAATCCCCAGGGACCCAGGCGCTGTCGTCTGTCGcgactgctttttttttttttgccaagttcGTTCCTTACTGTTCCCCAGGGGTTATTTTTCTCACGAGTGAAACTTGGTTCAAGAATGAAAAATTCTCATCAAAAAAtcaaatagatttttttaataatgaaCTCAATCAACAGCTCTAGAGGGGCATATTCGACCTGATTTGACTGTAATAAACTCAGatagttattttatttatttttgtcacTCTTTTCGAGGTGCAGAAATAACACTTAACTCACCCTTCATCATGCAAGTGTCCTTGTAATGTAgaaagtcatgtttttctctttatcCGGTGAAAAatgatatttccttttttgtaaCTGACATTGTCATCCTTAGAAAGTGTTCATTAATTACaccaagggggggagggagggaagatttttactcaagacaccCTAAAACACCATCAATATCTTCCCTTCCCCttcggtgtatttaatgaacactcccttataCAGCTTATTTGGCTGTGATGATCTCTACACCTCTGACATATGAATCAAATATGATTCCGTTATAATGATCTGAGCCATTTTCAATACTTGGACATAattttacgttttttttttatgttatcaTAGTCAACTATTTTCCTTAAATGCTGTTGTTAGAATTCTACAATGTTCTTACGATATTTTATGTGTCTTTTCAGGTCTCTTCGATTAAACATTGTAAAGCAACAAGCTTCGAAAcatcaaataaaaatgtcaAACTGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56K14	Large ribosomal subunit protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1
P05386	Large ribosomal subunit protein P1 OS=Homo sapiens OX=9606 GN=RPLP1 PE=1 SV=1
P19944	Large ribosomal subunit protein P1 OS=Rattus norvegicus OX=10116 GN=Rplp1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428 all species →	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027534 all species →	Family	Large ribosomal subunit protein P1/P2	Interproscan
IPR038716 all species →	Homologous_superfamily	Large ribosomal subunit protein P1/P2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45696 all species →	60S ACIDIC RIBOSOMAL PROTEIN P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030295 all species →	Molecular Function	protein kinase activator activity	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02942	RP-LP1, RPLP1; large subunit ribosomal protein LP1	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.