Gene detail

Detailed information of XP_032237054.1 in Nematostella vectensis

Genomic Location: NC_064044.1:12774825...12778638
NR annotation: XP_032237054.1, RNA-binding protein 38 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032381163.2

AGTCCTTTTAGTCGGTGTGTAAAACACAGGAATCGGGGCTGTTCGTATTATACACGTGTTTGCTCCGTGACATGTACACATCTCGTTCCATTGAAGTGCGCTGACCTAGCTTTGAGAGTGATCATCCAAGCAGTGCGGCAACAGCGCATACAACTCTACGCCTCAAGTTACACGCTTCAGAGTTCAAAAGGACACTGCCGTTACTCCATTAAGTTAGTCGAACCAAGCAGTGACCATGATAAGAAATCAAGACACCAAGTTTACTAAGCTTTTCGTTGGCGGGATTCCATACGAATCCGGTGATGATGCTTTGCGAAAGTTTTTCGCGCAGTTTGGAGAGATCAGAGAAGCTGTCGTCATTAAAGACCGTGTGACCAAGAAATCCAAGGGTTATGGATTTGTAACGATGGCTACCTCAGACGCCGCCGAGCTCGCGTGCAAGAACAAACGGCCGATGATCGAGGGGAGACAAGCTAATGTCAATCTTGCATATCTAGGCGCTAAACCCAAGCCTACAAGAGCGATGCGTAGCCCGCCGAGTTCGCCATATGCGTATTGTCCAGCAGTTACAGTGGGATCGCCAGCGCAGCAGTATCTTTACACACCAATGTACTCACCAACCCAGTCCGCGCCAACGCTATCGGGAAGCCCTTTAACGGTTATCCCACCCGGCCCTCAATCACCTAATGGTGTTGCGCCACAGGTTCAGACGATACAACCTTTCTATATCGACTATGGCGGAGGAACTGCCGTCGTTTTTAACGCCGTCTACGACCCATACTGCTATTCACCGCAGCCTACATACGTGCAAACGCTACCTCAGTCTCCTCCACCGACGAATTCACCGGTAACTCCAACATTCACGTTCCCAGGGCCCGTGAATCCAACAGTTCCCACTCAGCATTTTTTCCCGGCGCAATACGAGTTTATCGCCCAACCGCAAGTTCAATAGTATTCGTTAAGATGAAAGCAGTACACTTAAAAGTACTTCAAGATTTCAGAAATATAGAGGTTATCGGTCAATATTTTGTAGAAAGTCAATTTTCTAGAAAATTTAGAACATGTACAAATTTAGTTGTAGGCGCGAGGTTACAACTATTTGTAGCAAATTTTAATTTCAAGCCATCAACAAGCACCATAAATGTATTTCCATACGCGTAATATCATATCCTTTATTTAGAAATACAAGCCAAGTTTTAGAGATTTCGTAGACCTTGCCTACGGGATAGTAGTATTAGTATTAGGTCATGTATATAGCAAAACGAAGTCGCAATACGCGGCAAAGAAAATCCTGCTTTAAATAAGCAActttaatataatatacaaAAGCTGTAATTTGCGTAATAGGTATAGATTTTATCATTGCTGGTTAGAATTTTATCTTTCGTTCTATGAGAGACAAAACTTTACGAGCGCTTTCAAGTTTAATCgctttcatttttctttttttttcatctttatttcacattttaacaaaaatcaaTTTGCTTGAGTTGTTCTGATAGTTATTGGGTTTTTGTGTAAGGGTCTTGAACTTTTCAAAACGGTAGCTACAAATCATAACAGCCTTACGCTTGGGTTAAGCCGGTGACGCAATGGCGTACATAGCGACAGTGTTTAAGAAATCAAACCATCGAGTTCTTGAAAGTCTTTATTGGATGGTCTCTGGAACATTTTGCCCTCCGCCGCTTAATTGTCtcaaagtttattttttgctgaCTCGCCAAACTGGTGAAACCCATGAAAAACGAGAGACGTGTGTTTTGTATCAGACAACTGTGGTTAAGGTATTTGCCTCaggagaaaaatattttaataagaAAGAGATGAAAATTGAAATGGTGCTGAGCTAAGATGAAAACGCTCGTAATGATATCTACTACGCACTTTAGAACAAAAATTCACACATAACTGCTTCTAGTATTACTTAATATTAGCATAAATTAATCCATTTTCTGTAACTATTATACGTTGACTTTAGAAGGTCGcaataaacaaaacatcaaaGTG

Protein

Uniprot

Uniprot term	Description
Q5ZJX4	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1
Q6DIV4	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1
Q7T3I7	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050886	Family	RNA-binding_regulatory_proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48024	GEO13361P1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan