Genomic Location: NC_064040.1:15276973...15326736
NR annotation: XP_032237124.2, anaphase-promoting complex subunit 1 isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5511886 |
| Transcript |
| rna-XM_032381233.2 |
| Protein |
| XP_032237124.2 |
| UniProt accession | Description |
|---|---|
| Q9H1A4 | Anaphase-promoting complex subunit 1 OS=Homo sapiens OX=9606 GN=ANAPC1 PE=1 SV=1 |
| P53995 | Anaphase-promoting complex subunit 1 OS=Mus musculus OX=10090 GN=Anapc1 PE=1 SV=2 |
| Q54NC6 | Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=anapc1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002209 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21282 all species → | APC1_3rd | APC1 beta sandwich domain | Domain | Interproscan |
| PF18122 all species → | APC1_C | Anaphase-promoting complex sub unit 1 C-terminal domain | Domain | Interproscan |
| PF20518 all species → | Apc1_MidN | Anaphase-promoting complex subunit 1 middle domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024990 all species → | Family | Anaphase-promoting complex subunit 1 | Interproscan |
| IPR048971 all species → | Domain | Anaphase-promoting complex subunit 1, beta-sandwich domain | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR041221 all species → | Domain | Anaphase-promoting complex subunit 1, C-terminal | Interproscan |
| IPR046794 all species → | Domain | Anaphase-promoting complex subunit 1, middle domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12827 all species → | MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005680 all species → | Cellular Component | anaphase-promoting complex | Interproscan |
| GO:0007091 all species → | Biological Process | metaphase/anaphase transition of mitotic cell cycle | Interproscan |
| GO:0031145 all species → | Biological Process | anaphase-promoting complex-dependent catabolic process | Interproscan |
| GO:0060090 all species → | Molecular Function | molecular adaptor activity | Interproscan |
| GO:0070979 all species → | Biological Process | protein K11-linked ubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03348 | APC1, ANAPC1; anaphase-promoting complex subunit 1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of XP_032237124.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
