Gene detail

Detailed information of XP_032237704.2 in Nematostella vectensis

Genomic Location: NC_064042.1:12042402...12050132
NR annotation: XP_032237704.2, uncharacterized protein LOC5512374 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5512374

ATGACTATAGAATCCAGCATGTCGTTCGATCCGGCTCACGCTAGACTTCGTAAACGAGCTGCTAAACAGCTGAAACAGACTACTGCAGAGCAACTTGAACAAGAGACTAAGAAAATGGAGGAGCGTATACGAGCCCTTAAGGAACAGATGGTGAAGGAGAAGGAAGACAGAGAAAAAATTGGTGGTACACGGTGGTCATCAGGAAAAACAATAAACCCTCAATCAGCAGCAAATAAAAAGTCTGAAAGAAAAACAGATAAGGGGCCAAGAAAAATAAAAATTCTCACTGATGAACCATTGTCAACATATACATCAAAGAAGACAGCACTGCGAGAAAGTATTAATGAGACATTCACTGGCCCTGTTTGCGGTCAGTGTGAAAAAGCCAAGGCCACACTGGCCTGCAATGAATGCACAGAAAGCTATTGTGTCAGCTGTTTTATGTCGTTCCATAGAAAGGGAGCTCTACGAGCACACACCACTCGAAACTTGGACCAGTTTAACCAAGGGTTTCATGAGGAAAAACAAACCAGCAGAGCTCCAAAGCCTGAAGAGAGGAGCCGAGTGAAGTTGTCTCATGGAAGCACTTCCCAGAATAGCTCTCTTGAGCAGAAGACTGGTGGTGCGCTACTAAATGGAACATTTGACGAAGATGAGAGCTCAGCTTCCTTTGCTCAAGCCCTCAAGGAGTGGAGAAGTGCGCAAGGCAAAGACAACACGTGGGTGAACCCTGAAGACTCCCAGCCAGCAAAAGTTAAAGTGGCTACATGTGAAACAAGTACTGTACCAGAGAAGCTGACGCCGATCGACATGAAACTGAACTTCAGCAGCAACTCATCGCTGAGCTACCTTGACCGGCTTGTCCTAAAGAAGCATCGTGAAGAAGGACGCACTGCGTCAAGCCCTAAAAGCGAGGTGAATACCAAGAAAAACTCCCCAGTAAGTGAGGAGCTTCAAAATGAGACAGACCAGGGATATGGGATTAACTACAGGGAGATTTTCCAGAGTCTTGGAGCGCAGACAACGAGAGACAAGGCTTCTTTGAATGGCTACGAACGTTTTACTAGCCCTTCCAAAGGCGCCTTTATCATTGAAGAAGTACCGGACAATATCCCTGCGGAGGAAGCTTTGTGTATTGTCGACGAGGGACGGAACGAAGAGGCTGCACCCCAGAGGCCAACCTCGAGAACTGGGTGTGTCAGCATAATGGGGATGACCGCCTCAGGGGACTTCAGACCAGATGCTGATGATCTACATGCGGGCCCACCCCAACCGCAAGTAAGCACTGGCTCAAAGAGCTCTCTTGGAGGTTCCAAACCAAGTGGTAAATATTTACCATCAAGAAGTCAGTCCGCAAGCGCTGTACCGCGTGTCTGGAGCCCTAAACCGGGCTACAAAGGATTGTCAAATTTCTTCCTAGTCGGGGTCGATGCTGAATCTGCGAGCGAAAATCCACGATCTGAGCCCCGCTATAAGCCTTCCCCACCCAAGAACCCCCGCACCCCATCTCCACCCAAGAGAATCAGCCCAAAGTTACTTGCGCAGGGCGTGTGGAAGCCCGATGAGAGCGTCTACGCTTCCGAGGAAATCTCCCCAATGGCTGATAACGATCGTGGCAAGTATCCTGGCGGTGGGCCTGTCATTCCACTCGTACAAGAACCAGCAGACGCGCAAGACGCGGCGAACAACAACTCCCCGAGGAATCGCAAGCTAAAGATCAAGAAAAGGCTAAGCGACGGTGACAGTCGCTTGAAGGACTTTGGGATAAACGACTTCCTGAAGGCGTCCCCTGTACCGTCCAAGTTCTCGGAGGACTACTACGACGTCCACAGGGTGTCAACAGTCTCGCCTCTCTCGCTGTCGCCCAAACCACCACAGTTACACTGGTCCGACGACGACAGCGACGATGACGTCATACTGGAAGTGACGTCACGGGCGAGTATGCTGGAAGTGGCAAAGGCCGAAGAGGACGGGCTGAGACAGGATCAGGAGGATGACGATAAGGCCACCCTGGAGGACCTAACGTGGGAGCTCGCTTCCACCACAGGCCGCCTGACGCACTGCGAGGGCGACCTTGACGAGATGCTAGAGCCTGGGGATAGCTCTGAGGTGGACAGCATCGAGGAGGACCCTGACACTGGGAGCACATGTTCGCTGAACGATAGCCAGCACGAGCTCTCGATCCACAGCAGTGACTCAATGGACGAGGAGGAGATCATGATCGAGAGTAGAATGATGGAGCGGGAGGTGAAGGCTCTAGAGTAG

Transcript

rna-XM_032381813.2

AACATTTACCtctggtcacgtgaccatttACGAAAGCGCGGCGGCCATAACAAACCTCCGATGCCAGAGGAGAGAATATAAGATTTGAAATAAGCAGGGTTTGTTTCACCTTATAGCTCCAAAATTTCGGCACCCACACGGTTAGGAGTTTGACTGGAATGACTATAGAATCCAGCATGTCGTTCGATCCGGCTCACGCTAGACTTCGTAAACGAGCTGCTAAACAGCTGAAACAGACTACTGCAGAGCAACTTGAACAAGAGACTAAGAAAATGGAGGAGCGTATACGAGCCCTTAAGGAACAGATGGTGAAGGAGAAGGAAGACAGAGAAAAAATTGGTGGTACACGGTGGTCATCAGGAAAAACAATAAACCCTCAATCAGCAGCAAATAAAAAGTCTGAAAGAAAAACAGATAAGGGgccaagaaaaataaaaattctcACTGATGAACCATTGTcaacatatacatcAAAGAAGACAGCACTGCGAGAAAGTATTAATGAGACATTCACTGGCCCTGTTTGCGGTCAGTGTGAAAAAGCCAAGGCCACACTGGCCTGCAATGAATGCACAGAAAGCTATTGTGTCAGCTGTTTTATGTCGTTCCATAGAAAGGGAGCTCTACGAGCACACACCACTCGAAACTTGGACCAGTTTAACCAAGGGTTTCATGAGGAAAAACAAACCAGCAGAGCTCCAAAGCCTGAAGAGAGGAGccGAGTGAAGTTGTCTCATGGAAGCACTTCCCAGAATAGCTCTCTTGAGCAGAAGACTGGTGGTGCGCTACTAAATGGAACATTTGACGAAGATGAGAGCTCAGCTTCCTTTGCTCAAGCCCTCAAGGAGTGGAGAAGTGCGCAAGGCAAAGACAACACGTGGGTGAACCCTGAAGACTCCCAGCCAGCAAAAGTTAAAGTGGCTACATGTGAAACAAGTACTGTACCAGAGAAGCTGACGCCGATCGACATGAAACTGAACTTCAGCAGCAACTCATCGCTGAGCTACCTTGACCGGCTTGTCCTAAAGAAGCATCGTGAAGAAGGACGCACTGCGTCAAGCCCTAAAAGCGAGGTGAATACCAAGAAAAACTCCCCAGTAAGTGAGGAGCTTCAAAATGAGACAGACCAGGGATATGGGATTAACTACAGGGAGATTTTCCAGAGTCTTGGAGCGCAGACAACGAGAGACAAGGCTTCTTTGAATGGCTACGAACGTTTTACTAGCCCTTCCAAAGGCGCCTTTATCATTGAAGAAGTACCGGACAATATCCCTGCGGAGGAAGCTTTGTGTATTGTCGACGAGGGACGGAACGAAGAGGCTGCACCCCAGAGGCCAACCTCGAGAACTGGGTGTGTCAGCATAATGGGGATGACCGCCTCAGGGGACTTCAGACCAGATGCTGATGATCTACATGCGGGCCCACCCCAACCGCAAGTAAGCACTGGCTCAAAGAGCTCTCTTGGAGGTTCCAAACCAAGTGGTAAATATTTACCATCAAGAAGTCAGTCCGCAAGCGCTGTACCGCGTGTCTGGAGCCCTAAACCGGGCTACAAAGGATTGTCAAATTTCTTCCTAGTCGGGGTCGATGCTGAATCTGCGAGCGAAAATCCACGATCTGAGCCCCGCTATAAGCCTTCCCCACCCAAGAACCCCCGCACCCCATCTCCACCCAAGAGAATCAGCCCAAAGTTACTTGCGCAGGGCGTGTGGAAGCCCGATGAGAGCGTCTACGCTTCCGAGGAAATCTCCCCAATGGCTGATAACGATCGTGGCAAGTATCCTGGCGGTGGGCCTGTCATTCCACTCGTACAAGAACCAGCAGACGCGCAAGACGCGGCGAACAACAACTCCCCGAGGAATCGCAAGCTAAAGATCAAGAAAAGGCTAAGCGACGGTGACAGTCGCTTGAAGGACTTTGGGATAAACGACTTCCTGAAGGCGTCCCCTGTACCGTCCAAGTTCTCGGAGGACTACTACGACGTCCACAGGGTGTCAACAGTCTCGCCTCTCTCGCTGTCGCCCAAACCACCACAGTTACACTGGTCCGACGACGACAGCgacgatgacgtcatactggaagtgacgtcacgggCGAGTATGCTGGAAGTGGCAAAGGCCGAAGAGGACGGGCTGAGACAGGATCAGGAGGATGACGATAAGGCCACCCTGGAGGACCTAACGTGGGAGCTCGCTTCCACCACAGGCCGCCTGACGCACTGCGAGGGCGACCTTGACGAGATGCTAGAGCCTGGGGATAGCTCTGAGGTGGACAGCATCGAGGAGGACCCTGACACTGGGAGCACATGTTCGCTGAACGATAGCCAGCACGAGCTCTCGATCCACAGCAGTGACTCAATGGACGAGGAGGAGATCATGATCGAGAGTAGAATGATGGAGCGGGAGGTGAAGGCTCTAGAGTAGCACGTGGACAGTTTGATGTGATCACGTGCCCCACTCGTGAAAGACATGACAATCTAGAGCAGTGACTGCTGGGCGATATAGAAATGACTATTAAAAGCGGGATGATGGAGTGAAAAGCACGTGGACAGTTACTTGTGATCATGTGCTCGGCTTGTGACAATCATGTCACGATAAAGATGCTATGTTTAAAAGCGGGAAGATGGAGTGAAGGCTCAATAATAGCACGTGGACGTTTTGATGTGATCACGTCTTGAGTCTTAAGTGATCACGTGCTCAGTGCGTGATAAGGGCAATGCAGCGATAAGCGAAGGCTCCATTCTAAATACAGTGAAAAGAAAAGCCAATGAAATCACGTCGTTGAACTGTCTGCCTCTTTATTGGTCAGACACATTCATTGTTCTGCAAATTTAACCAGCATAGTTTACggctaaaatatatatatttaatttaaaaaaaaaaaataacgcaTTGTGTTGTTATtactttttcaaataaaatcaaCGAGTTAGTTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR037688 all species →	Family	Zinc finger B-box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28634 all species →	ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032237704.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032237704.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

34.2Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.00	13.86
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.64	7.37
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.53	11.14
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	11.72	12.49
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.63	14.51
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	13.64	34.15
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.67	7.75
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.98	12.96
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.90	11.72
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	7.68	15.80
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.85	10.95
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	9.85	16.19
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.24	12.71
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	6.37	10.43
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	8.65	10.98
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.39	13.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.86
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.84
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.31
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.37
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.79
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.76
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.14
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.28
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.17
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.49
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.49
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.17
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.51
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.18
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.21
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	34.15
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.78
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.75
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.26
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.96
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.24
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.73
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.72
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.99
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.80
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.24
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.95
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.95
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.66
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.19
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.00
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.35
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.71
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.15
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.86
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.43
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.67
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.98
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.59
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.38
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	13.16
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.