Gene detail

Detailed information of XP_032237759.2 in Nematostella vectensis

Genomic Location: NC_064048.1:8981560...8989773
NR annotation: XP_032237759.2, C-Jun-amino-terminal kinase-interacting protein 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032381868.2

TTTATTTTCATTCTGTTTTCAAAACAGACGTCAAACGCTTTCttttgttcttattattttgACTTTAAATCGCCAggctattctttttttaatcatacAACTTTCGGTCTCAAATGACGAAACATTCTGAATGGAAGTGACTGGAAAAACTCACATAAACTGAAAGCTCTTGGATTTGAGGTTAGGTGTCCTGCGAAATTTGATACTTCTCTCGGCGACACTTGAATCGCTCTGAAAGCTTCacaatcattttatttattcattcctTGGTGCTAATACTTGCTGGGGTTTGTTTTAAGAACTTAAATTGATGTATGTTTAAGTTTCTCGCAGTTTCACGCGAGAAAAGGAGCTATCTTCGTACTATTTCCCGACCGTTTTGTAATGTGTTGAGTTTTGACATGGATCTTGGTGAAATCCTCGCGAAATGTTGAATTCTAATGGAGCAGCTGCAACCCCAAAGTCTACGCGGAGGAGACAATCACAAGAACAACAGGATTATACGTCTGGATATCCAAATAACGAAGAGTATAGAGAGGACCTTGGACAAATTACGCACGGAATAAATACTTTAGTTCATGACATTTATAACGAACCGGATGATTTAGAAAGCGTAGGGCTTTTCCCAGCTAGCGAACAGGAAGTGAGACATCATGGTTCGAGACAAGCGAATAATTCCAATCAAAGAATCGTAAGTTACTCGCACAGCCCGGGGATACTCAGGCGATGTCGGCTACCTTTTTCAAGAGGAAATGGGACTGTTGCCATGTCAAAACAACCGGTAAACCGAGACCCTCGAAAGAATATCCCTAAGAATCATAACTCTCAAGTGCAGAGTGAAATGAAAAACTATCGATGCCAGAGAGGAGGTGATCCTAATTCAGATGGGGTCTCTGATATATCTGCTTGCTCATCAGGGTCACATAGTTCCACTGATGAGTCAGGGTTGAGCCCAACGGGACAGTTGAAACAAACTCACGTTGCAACCCACAAGTTTATTATGCGCCATAACGATGAAATCAACCTTGATGAAGGTGATCCAATGATGGTGTATCAAACCTGTGAAGATTTGTGGTGCGAAGGGACGAATTTGCGGACTGGGCAGTGCGGGGTGTTTCCGTCTCGATATGTAGCAAGTATTCTAAACTCACAAAGAAAACGAcaagATTCTTTTTCAACATTCAGTACTTCCAGCTCCTCTAATCACAACCAGTTTCACTTAAGGTTTCTTGGCTCAGTTGAGGTCAAGTATTATAAAGGAAACGATGTCCTGTGCACAGCCATGAAAGAGATTGTGAAGCAAAGACGGCTCTCTGTCACACAGAGTTCTCCACCATTCTGTACAGTAGAGGTCAGCGTGAAGGGGATAAGTGTGGTACAACACGGCACAGAGGGGGCAGAAGAGGCCCAAAGCCCTAAGAAGTCTGCCAGCAGGACCAAGTTGGGAAAGCTATTCGACAAAGATCAAAAGGGCCTGTCCGAAACAAAGTTATTCTTCTTCCTGAAGAACGTCACCTTTTGTGGCTGCCATCCTAATAACACAAGATACTTTGCGTTCATCACAAAACACCCAGAGGAACCTCGATTTGCATGTCACGTGTTCATGTCTGAGTTCTCCACCGAACCTGTGGCCTACTCTATTGGAAAAGCGTTTAAGGATTTCTACGCTGACTTCCTTGGTCATCAAAGCTCGAGTGGGGATGATTTTTACGTGGATTAGCAGTAATCCTCCCTGGGGAGTGCTGGATTCCGAGTGTTTTTAGAAGCTAAAGGTATTTAGTGTTAGTCTTTGCAACTTAGTTTTACCAAATCGTGCACTTCCAAAAACGTTTTCAGTAGGGAAGTCATTAATCGGTTAAGGTTTACAAATTAAGTCATGGCTAAACAGTGTGAATGAATTTGAAATTTGTAACTTTCAGCAACAAAGACGCATACATACAATtgaattcctttttttatctcGGATGTCATAGGAGGAGAACTCGTGAatgtaagatattttttctttcttgttttataAGGTATTATATCCAACACTCACATCGAATTACAATTTTCGGATACGCTAAAGCGtttataaaaagaataaatatgTCACAAATAAAATAGTTTATCGAGAcaatttaaataataaaaaagataaaacttACAGATCACACAGATTTGTTAATTTATactatttgatattttaaatTATATTAGAGTTTAaattatattgaaatatattaaATTAAGTTATTACTTTGTTTTGAATTATGTATGTATTACATTTGGTCATTATTATATCACATATaaatgatttgttttcttgtttatcGCAGGCAGATTAGATAATtcgatttttttatgtaaaagGTGTAAAGTGCATGTTCGTCCTCCGGACGGTAAAACATTTGTAAATTTTGAGAAGATATCTAAAAGTAGTagtctaaaaataaaaccttgTGCCTTCTTTACCAAATTCgatcgaaaataaaacaatagctTTCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R237	C-Jun-amino-terminal kinase-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Mapk8ip1 PE=1 SV=2
Q9UQF2	C-Jun-amino-terminal kinase-interacting protein 1 OS=Homo sapiens OX=9606 GN=MAPK8IP1 PE=1 SV=1
Q9WVI9	C-Jun-amino-terminal kinase-interacting protein 1 OS=Mus musculus OX=10090 GN=Mapk8ip1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006917 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR047178 all species →	Family	JNK-interacting protein 1	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47437 all species →	JNK-INTERACTING PROTEIN 1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005078 all species →	Molecular Function	MAP-kinase scaffold activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007254 all species →	Biological Process	JNK cascade	Interproscan
GO:0008432 all species →	Molecular Function	JUN kinase binding	Interproscan
GO:0046328 all species →	Biological Process	regulation of JNK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04434	MAPK8IP1, JIP1; mitogen-activated protein kinase 8 interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032237759.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

33TPM > 0

16Conditions

2.1Max TPM

0.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.47	1.40
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.06	1.48
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.45	2.06
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.18	1.45
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.69	2.02
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.38	1.13
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.52	0.88
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	0.51	0.78
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.63	1.07
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.52	0.82
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	0.79	1.28
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.61	0.99
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.64	1.21
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.27	0.82
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.73	1.17
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.48	1.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.40
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.48
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.86
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.85
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.06
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.26
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.04
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.45
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.13
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.96
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.02
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.79
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.27
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.13
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.88
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.67
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.78
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.75
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.07
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.81
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.82
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.75
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.28
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.62
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.49
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.99
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.84
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.21
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.72
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.82
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.17
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.01
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.45
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.