Gene detail

Detailed information of XP_032237861.2 in Nematostella vectensis

Genomic Location: NC_064043.1:12520471...12532920
NR annotation: XP_032237861.2, TBC1 domain family member 19 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032381970.2

GTAAAACCGCTGACTTCCAGCAGACTCAACCTTCCTCTACGCCGGTGGAAAATTGCTTCcctcaaaatggcggcaaaaGCTTAGTTGTTGTCAAAAACATCGTCATTTGTATAAAACTCTTATTTTCTCTATAACAATGGAAGCGAAGCTGTCAAAACTTTAAGAGTTTATTATATTAAGCTTGTTTCAGAGACAGTTAAGTCTTGCAACTTCAATAtgaatatatttatataagaGAGAGCAAAAAGCGGTTTGACATGGAAACGGACAACAACATTGAGAAAGTGCAATGGCTGACAGATCATTTACAGAACAGCGCCATCTTCACGAAAATCAGGAAGGATTTGCAGAAAGAGGTAGCGAAATCCCACATTCCCttgaaccaatcagagatgagAGCCAGCCTGCTCAAGTACATCAGAGAGTCAGGCTGGGAGGTTAAGCTACAGAATGCTGTGTACCGGCAACTGATTGTaaatcccATTCCACCTCCTGCTTATATACCAGAGCCTCACTCCAAAGAACCCCTTGCATTCATACGCAAAGCGCAGGCCACATGGGAAAAAAGAATTGTGAAAAGTGTCAACAGCATGTGCACTGAGTTAAGCCTACCTCTGGCAAGAAAGCGCTCTGCTATTGACCAGGCCACCATGGCATCAACATTTGAGACGCTTGGAGCAGATTTGAATGAGAAAGAATTTGAAAAGATCAAACCTGTCTATGCGCCTAAAGACTTTTTTGAGGCTTTGGTTGCAGTGGAGAATCCAAACTTTACGCCATTACGAAAGTCACCTAGttCTATCAAGGGTTGGGGCCTTGTTCAAGTGAACCTGTACACAAAAGATCTCCATGAGTTGCGGTCTACATTTCGTGAACTGGAACCTAACACATGCCATTGTGGCGTAGATGACATGACTGGTAGCAACACAGTCGAGAATTTTGAAACAGATTGGTACAAAATGGGAAAGAAAGTGGTCCATAATGGCAGCGCTATGGCAGCGAGGCAGTTTGCTAAGTATGGATGCCCGTCAGGTATCCGTGGTGAGATATGGAAGCAGATCCTTTGTCTCAAGGTTGATGATGTTGaattgttgtattttcaacAGCTCAAGAGTTATGTTATCCAGCATGAAATGTTGGTTGATAGTCTAGTAATGAAGGATATTCGGATCACAGCAACTAACGATGATGACTACTTTGTGTTTGAGGATCTTCTTTATCAGGCGATGTTAGTGTTTACACGAGATACTGCTGTCCTGAAACACTTCCAGCAATCAAGTGCCACAGCTCCTAAGTCTTACATTAGAGGAAAACTTGGCGTTCAAGAGTTTGCTGTTGCGTATCCCCCAAATGGTATTATGCCATTCCATGGGTTTTCAATGCATGCCGCCCCACTATGCTACGTGTGCTCTCACGCTCCGGGGATGTATTTCCTGTTCAGAGAAATGTACACAAGgTATTTCTTCCGCCTGCATACCATGTCTTCTCATCCCCAGGGCATAATGTCGTTATGCTTGCTGTTCGAGAATCTTCTTCAAACTCATGAGCCTTTATTACTTTATCATCTCAAGGAAGTAGGAGCCCCACCGCTACGGCTGGTATTTAGTTGGATGGTTTATGCGTTTTCTGGATATTTATCTACAGATCAGGTTCTCCTTCTGTGGGATAGGATACTTGCATACGACTCACTAGAATTGCTTCCAGTTATGGCTATGGCTATATTATCTTATCGTCGTAGCAATCTCATGGAAGTCACAAGTTTGCAAGCTGCCCAGACTGTGCTGGCCGATGTTTCTACGCTCAATGTCATTTCTCTCCTCCAGTACGTACTCTTCTTGAAGTAGTAAGTGCACTATTAACTTCCAAATAGACACTTGACAATCAAACGCTGCCACCAACATTACTATCAtcttcaacatcatcatcaaccttCGGCATCAGCCAAAATGGTCCGCACAATCTCTCTCCACACCCTACGATCTGCTGTTGCACTTGGCAGATGTTGCCGAGGGATCATTGGACCCGAGAAATTGAATGTGATAGTTTCTCGGACCTCACAAGGAGCACCAGTACTGGAAGAGGACATAGATGTCAGAGGACCAGAGTTGTGCCCAGCATTTGTCAAGTTGGGGTACTAGATAGCACTACAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N5T2	TBC1 domain family member 19 OS=Homo sapiens OX=9606 GN=TBC1D19 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003557 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042507 all species →	Family	TBC1 domain family member 19	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16110 all species →	TBC1 DOMAIN FAMILY MEMBER 19	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_032237861.2 in Nematostella vectensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032237861.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032237861.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

9.7Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	6.80	7.94
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.36	7.58
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.94	5.35
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.06	6.65
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.76	7.27
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	4.35	6.86
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.20	9.19
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.78	6.10
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.22	6.98
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.93	6.35
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.84	7.38
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.82	6.02
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	4.88	8.08
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.77	8.30
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	5.62	9.69
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.08	6.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.94
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.44
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.04
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.58
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.31
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.19
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.35
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.33
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.14
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.65
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.42
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.11
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.27
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.53
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.46
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.86
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.18
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.19
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.40
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.10
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.04
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.21
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.98
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.68
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.35
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.44
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.38
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.52
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.61
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.02
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.45
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.08
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.55
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.30
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.69
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.17
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.25
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.