Genomic Location: NC_064036.1:4577176...4587856
NR annotation: XP_032237951.2, msx2-interacting protein [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5512592 |
| Transcript |
| rna-XM_032382060.2 |
| Protein |
| XP_032237951.2 |
| UniProt accession | Description |
|---|---|
| Q96T58 | Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1 |
| Q62504 | Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2 |
| Q8SX83 | Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002806 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF07744 all species → | SPOC | SPOC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR034174 all species → | Domain | SHARP, RNA recognition motif 3 | Interproscan |
| IPR034172 all species → | Domain | SHARP, RNA recognition motif 1 | Interproscan |
| IPR012921 all species → | Domain | Spen paralogue and orthologue SPOC, C-terminal | Interproscan |
| IPR034173 all species → | Domain | SHARP, RNA recognition motif 2 | Interproscan |
| IPR010912 all species → | Domain | Spen paralogue/orthologue C-terminal, metazoa | Interproscan |
| IPR016194 all species → | Homologous_superfamily | SPOC-like, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23189 all species → | RNA RECOGNITION MOTIF-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13190 | RBM15; RNA-binding protein 15 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of XP_032237951.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 21.66 | 23.84 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 18.92 | 24.72 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 26.60 | 28.99 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 24.44 | 27.81 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 18.34 | 21.03 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 18.69 | 32.63 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 25.55 | 28.50 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 25.55 | 31.14 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 25.16 | 26.61 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 26.99 | 28.68 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 22.57 | 26.19 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 24.44 | 26.99 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 20.85 | 25.24 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 16.79 | 26.52 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 19.85 | 24.11 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 8.66 | 25.98 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
