Gene detail

Detailed information of XP_032238005.2 in Nematostella vectensis

Genomic Location: NC_064042.1:10885216...10897451
NR annotation: XP_032238005.2, origin recognition complex subunit 3 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5512669

ATGGCGGACGAGAATGTCGGCACCACATCTTCAGTATCCAAAGGATGTTTTTTGTTCAAGAAAACGCCGGATGGATCTCCGCGAAAACGGCGGTACAAAAACGCAGTGGATTTAATGGGAGCGGCAGAAGGAGAAAGTTTGGAAAATGTGCAACAGAGATATGATAACTTGAAGTACTGCTTGGGAACAGTGAAGCACCTGATAGAGGGTCTGCAAACCAACAGTAAAGTGTTCTCTCAGCTCATTGACTTCATCAAGACATCCCATGGCTCTGCCACAGAGCCACGCCTCCATGGGGTAATACGGGAAATTCCAACTGCTGTATTAATAACAGGTGTCAACATGCCTGATCATGATATTATCTTCTCCCAACTGGTGACAGACCTGTCATTGGTCACTCCTTACACAGCGGTCATGAAATCTAAAGATTGCACAGCCATGAAGTCTACCATGAAGAATATGATGGTGCAGTTTATGGATTGTGAAATAGATGATGATGAAGAAATTCGAAGTCCTCGTCAAGCACACTCCAAGCTGAGCTCCATGCCACAACTGTGCCGCTGGTACACAAGGAGATGTCAGAGTGAAGGCCCAAATGTTTCCCCTGCAATGGTTATCATATTTGAGGACTTTGAAGGCTTTCCTGCACACATTGTCCAAGATTTTATCACTATTTGTAGCCAATATGCCGACCATCTTCCTCTTGTCCTGGTGTTTGGTGTCGCGACATCTGTAGCCGCCATTCACCAAGTGCTCCCACACTCAGTCTCAACTCTGCTGTCCATCCAGAGATTCCAATCACAGCCCTCACTTGTTTGCTTACAGGAAATAATCTCTCAGGTTTTGATGACACCTAAATATTCTTTCAAACTAGGGGCCAAAGTGTTCAGATTTCTGTATGAAAATTTTCTGTTCCACGACTTTTCTCTTCAGAACTTTAGCACTGGACTTCAGTTTTGTATACTGGAGCACTTCTACTGCAACCCTGCTAGCATATTGTGCTGTCCATCCTCTGCTGACCGTGAGGACATCATCCGGGAATTGACAGATGATGAATTGGACATCATCAGGAGCCTCCTGTCATTCAAGAGGCATGTTGAAAGCTGCAACAAGCAGCAGCAAGCACAACTACTGACGGACAGTGGCCATACTAAGGAAGTCATCATTGAGTTACTTAATGGTTTGGACTCTTACCATTGGTACTTCTTCCCAATTCTGGACTGTCTGCATGCCATGGCTGCAAACCTACCCAGGCTTCCACTAGGCAAAAAGGTTCGTGATCTCTATGAATACAGTTTATCTCCAACACATATCTACCACCAAGACAAGTACCGCGATGCTTTGGCTTTGCTGAGGGTTTTGGCAAAGGATGAACTTGTGGAGATTATTATCAAATGTGTGAATATCCTGGAAAAATTTCTTGAGACTGCTTTAAATGCCAAGAAATGCCCCGACCTTTTCAATTACAAGAAGAATATGTTAGAGTTTTTAGAACAGTTTGAAAAACTAAGTGAGCAACAAGAACCAGTCAGGCCAGCAACCCTGCCAACCGGGAAAGGCGGCACGCCGAAAATTGTCAACAGATTTGAGCTTCAAGAGAAATTGCGTTTAGCAGCCACTCAGAAGAGAAAAGACACACCTTACGACCAGCTTCGCCAAAAGACAGTAGACTACATGGACAGCCTCTTCAGGAAACATCTTCGAAGTCCTCAAAGTTTACCACTGCATGAGGTGATGTATTTCGACAAGCTGCACAAAGTCAAGGAGCACCTGATAGGTATGCCGCGGGCAGCAATACAAACTGCGCTCAGCGATCCTCGACACTACCTCAAGTGCGAATGCTGTGAGATAGAGGCTGGCGCTATCCAGGTTTCCTTGCCTGATGTCTCGGTGGCATATAAACTTTACCTTGAATGCAGCAGGATGATCAATCTTTACGACTGGCTACAGGCTTTCAAGGTTGTGCTAGACCCAGACCCGAAAGCATCTACGAAGACTCCGTCCAAAAAGCAAAAGAAGTCGGACGCGCAGCTCCAAGCACGGTTTATTCGTGCCGTTTCTGAGCTACAGTTCATGGGTTTTATTAAACCCACCAAAAGGAAAACAGACCATGTGCAGCGCTTGACATGGGGAGGCTGCTAA

Transcript

rna-XM_032382114.2

AAGAAACTGGAAGGTACTGGGTACTGAGCCCGCGAAATTTCTTTTCCTCAAACCCAACATTCTAAAATGGCGGACGAGAATGTCGGCACCACATCTTCAGTATCCAAAggatGTTTTTTGTTCAAGAAAACGCCGGATGGATCTCCGCGAAAACGGCGGTACAAAAACGCAGTGGatttaatGGGAGCGGCAGAAGGAGAAAGTTTGGAAAATGTGCAACAGAGATATGATAACTTGAAGTACTGCTTGGGAACAGTGAAGCACCTGATAGAGGGTCTGCAAACCAACAGTAAAGTGTTCTCTCAGCTCATTGACTTCATCAAGACATCCCATGGCTCTGCCACAGAGCCACGCCTCCATGGGGTAATACGGGAAATTCCAACTGCTGTATTAATAACAGGTGTCAACATGCCTGATCATGATATTATCTTCTCCCAACTGGTGACAGACCTGTCATTGGTCACTCCTTACACAGCGGTCATGAAATCTAAAGATTGCACAGCCATGAAGTCTACCATGAAGAATATGATGGTGCAGTTTATGGATTGTGAAATAGAtGATGATGAAGAAATTCGAAGTCCTCGTCAAGCACACTCCAAGCTGAGCTCCATGCCACAACTGTGCCGCTGGTACACAAGGAGATGTCAGAGTGAAGGCCCAAATGTTTCCCCTGCAATGGTTATCATATTTgaggactttgaaggctttcCTGCACACATTGTCCAAGATTTTATCACTATTTGTAGCCAATATGCCGACCATCTTCCTCTTGTCCTGGTGTTTGGTGTCGCGACATCTGTAGCCGCCATTCACCAAGTGCTCCCACACTCAGTCTCAACTCTGCTGTCCATCCAGAGATTCCAATCACAGCCCTCACTTGTTTGCTTACAGGAAATAATCTCTCAGgttttgATGACACCTAAATATTCTTTCAAACTAGGGGCCAAAGTGTTCAGATTTCTGTATGAAAATTTTCTGTTCCACGACTTTTCTCTTCAGAACTTTAGCACTGGACTTCAGTTTTGTATACTGGAGCACTTCTACTGCAACCCTGCTAGCATATTGTGCTGTCCATCCTCTGCTGACCGTGAGGACATCATCCGGGAATTGACAGATGATGAATTGGACATCATCAGGAGCCTCCTGTCATTCAAGAGGCATGTTGAAAGCTGCAACAAGCAGCAGCAAGCACAACTACTGACGGACAGTGGCCATACTAAGGAAGTCATCATTGAGTTACTTAATGGTTTGGACTCTTACCATTGGTACTTCTTCCCAATTCTGGACTGTCTGCATGCCATGGCTGCAAACCTACCCAGGCTTCCACTAGGCAAAAAGGTTCGTGATCTCTATGAATACAGTTTATCTCCAACACATATCTACCACCAAGACAAGTACCGCGATGCTTTGGCTTTGCTGAGGGTTTTGGCAAAGGATGAACTTGTGGAGATTATTATCAAATGTGTGAATATCCTGGAAAAATTTCTTGAGACTGCTTTAAATGCCAAGAAATGCCCCGACCTTTTCAATTACAAGAAGAATATGTTAGAGTttttagaacagtttgaaAAACTAAGTGAGCAACAAGAACCAGTCAGGCCAGCAACCCTGCCAACCGGGAAAGGCGGCACGCCgaaaattgtcaacagatttGAGCTTCAAGAGAAATTGCGTTTAGCAGCCACTCAGAAGAGAAAAGACACACCTTACGACCAGCTTCGCCAAAAGACAGTAGACTACATGGACAGCCTCTTCAGGAAACATCTTCGAAGTCCTCAAAGTTTACCACTGCATGAGGTGATGTATTTCGACAAGCTGCACAAAGTCAAGGAGCACCTGATAGGTATGCCGCGGGCAGCAATACAAACTGCGCTCAGCGATCCTCGACACTACCTCAAGTGCGAATGCTGTGAGATAGAGGCTGGCGCTATCCAGGTTTCCTTGCCTGATGTCTCGGTGGCATATAAACTTTACCTTGAATGCAGCAGGATGATCAATCTTTACGACTGGCTACAGGCTTTCAAGGTTGTGCTAGACCCAGACCCGAAAGCATCTACGAAGACTCCGTCCAAAAAGCAAAAGAAGTCGGACGCGCAGCTCCAAGCACGGTTTATTCGTGCCGTTTCTGAGCTACAGTTCATGGGTTTTATTAAACCCACCAAAAGGAAAACAGACCATGTGCAGCGCTTGACATGGGGAGGCTGCTAACTACGGATGTCACACACCCACTAGGGCTGTAGGCCAGGGAGTGCCATGTGTACCCTGAAGTACTCGGAAATGCCTTCAACCAAGGTTATTGAAGCAACCAAGAGGGGCAGATGCATTACTGGCAACGCCCCTGAAATTAGGAGTCTGCTAGCTGGGAACCATCACAGACACtatttttctcttaaaagGTGTCCCTATGCTGCACCCTAGAGTACTCTAGTCAAAGATTTTTCACCTGAGGCAACTGTTCAATTAAGAGTTGTAAAAGAGGAGGCAGTGCAGCGCTCCTACATGGGAAAGCTGATTGCTACAAATGACCCACGGAATATTTCCCTAAGAGGTATACCGATGGCCAATTACTCAAGATCACTGGGGCAATATTCACTTAAAGAGTGATAGATGTATTTCTAGGCAGCGCTCCACCTTCTGGGACACCAGGTGATAGAAGAGCTAGTGTCATGTCCCTTACATATTGTGCGATGGCTGGTATATGTTAATGATAGGGAGAAGCTACTTTCATTCGGGTATACTTCCGCTATGCCCATAGTTCCCCAAGGGGTAAATGATGAGATATAGACAGTAAATAGTGCCTGTCTGCTGCAGAGCCACGATGAAAGAGACGAAATTTCGAAAAGTTTCTCATATATAAGAAAGGATAGTGCATTAATCATGGATAGCCTATCTTTTCGTTTTTTCTCTGTTATACCCTTGAAAAGGAATAATGGATCAGTCTCTAGGGATCTCAAAGTAAGTTATGGGTTAATAATGTACTGCAATGATTAACCtgttgaaaaataaataaattaaaaaagaccGAAAAAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBD5	Origin recognition complex subunit 3 OS=Homo sapiens OX=9606 GN=ORC3 PE=1 SV=1
Q4R180	Origin recognition complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Orc3 PE=2 SV=1
Q5DJU3	Origin recognition complex subunit 3 OS=Spermophilus citellus OX=9997 GN=ORC3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003984 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07034 all species →	ORC3_N	Origin recognition complex (ORC) subunit 3 N-terminus	Domain	Interproscan
PF18137 all species →	ORC_WH_C	Origin recognition complex winged helix C-terminal	Domain	Interproscan
PF19675 all species →	ORC3_ins	Origin recognition complex subunit 3 insertion domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020795 all species →	Family	Origin recognition complex, subunit 3	Interproscan
IPR045667 all species →	Domain	Origin recognition complex subunit 3, N-terminal	Interproscan
IPR040855 all species →	Domain	Origin recognition complex subunit 3, winged helix C-terminal	Interproscan
IPR045663 all species →	Domain	Origin recognition complex subunit 3, insertion domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12748 all species →	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003688 all species →	Molecular Function	DNA replication origin binding	Interproscan
GO:0005656 all species →	Cellular Component	nuclear pre-replicative complex	Interproscan
GO:0005664 all species →	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0031261 all species →	Cellular Component	DNA replication preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02605	ORC3; origin recognition complex subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032238005.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

8.2Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.99	8.20
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.54	4.50
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.78	3.51
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.22	3.49
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.68	3.80
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.25	3.74
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.06	4.84
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	3.16	5.20
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.62	3.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.34	3.88
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.49	3.66
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	4.05	6.76
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	5.91	6.86
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.86	5.57
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.97	4.96
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.08	3.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.20
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.37
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.41
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.50
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.56
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.57
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.51
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.61
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.22
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.49
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.41
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.74
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.80
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.63
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.61
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.74
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.84
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.34
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.20
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.28
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.95
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.92
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.88
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.15
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.66
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.51
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.29
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.76
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.40
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.86
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.51
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.36
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.57
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.96
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.96
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.25
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.