Gene detail

Detailed information of XP_032238455.2 in Nematostella vectensis

Genomic Location: NC_064037.1:3879243...3886695
NR annotation: XP_032238455.2, transmembrane protein 248 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032382564.2

GAAGCTGTCGCGAAAAGCACCATGGGTGGTCTTCAAGCTCGCAGAGACTTATGGGAGCCTTATTTACAATATGGCGGCGATGTTGTGAAAGACGATTGTACCATTCAAGAACTCATACAAAACTTACAAGTTCAGTGATGTAAATAACAACTTCTAGAACGATCCAAGGTAGCAGCAATGTTTAATTGCAAATGCATCAAGAATTTGGTTGGGTTCGCAAACTCTAGACCACCTTGTGTCGTGTTCACTGCTTGTTTGGCAGTGTTTGCGGTTGGCCTATTTTCTCTTGGCTACTACATGCAAGTTGGAGTTTTCGATGAGGAGAATACGGATTGGAGAATGTTCATTGGCAGCTTAGCGCAGAAGGAATTTTGTATGTTTAGCAACAACACTCTGAACAGCACCCTAAACTACACAGTAAGCGAGAACTTGACACTCTCTGCTAGCTTGATCCCTGTGACATTACCAATGATTCTCCGTGTATACCCGGGAAATCTTTTCCTGGGGACGGTCACCAATGTTAGCCATGTTACAACTATTGTGAGAGGTGGAGAGCTTGGATTGTCTGGCGCAATGCATTCTCAACCAGTGAACTTGACCTTCAAACTGGAAAAGCATTGGTCGGTATCATGCGAGGGTGTGGCCTGCCCTAATAGTGGATTTGCGGCATGTGGAGTTGTCTCATTACCAGCAGAGATCATTCCAGCAGACATGCCACACAATTACTGCAATGTGTCATATGAACCAGTGTCTGCAATGGTGGAAATGACATCCGTGGGGAGCTGCTCCAAGAGCAATGTTCTGGTCAAGACATCTGTACCCAGATACTTGGAGGATCATACCACAGAGAAATGGGTAGATGTTGGAAATAATGAATGGGAGACCGTGAACCTTCGCCTGCAGTACTCCAGCTACTTTCTGTTTGTGATGGTTATCACCTGTATACTCTATGGCATGATTAAAGGCAGGCCTGTCAAGAACTCCAAAAAGATAGGAGGTCAGACAATATGAGGAAAACAGCTCAAATTAAAGCAGGCCTTCCAAGAATTCAAAAAGTTAGAAAGTAGTAATCTGAGTAAAAGAGCATCCAGCCAAGAACTTAAAGAAGAAGGATGTTCAGATAGTCTTCAATGAGATGGCTCATGTACATAATCTAGGATAATCTTAAAAAGGCAGTTAATTCAGCACATTAATAGTAAATTGTGTGTTTTAGTTTATATAGTCTTCAGGACTGCCATGTTAGGTGATCATTTAGCATATAGCAGAGaagtagcagggggtgggacaCTGGGGGCAACTGGCCCCCCAgtaatttgaaaaattataaggaaatgaccagtaaaggtgtggctgtgccccccccccccaatatttcgaggcctgctactgCCCTGTATAGCACTGTGAAAAATGTGAAAGTGTCAAGGAAAATTGATGCAGCTGTAATAggaatgcaaaaaaatatatttatgtgCCATATAGCAACAAAGAAATACACTTATAATTCTGTTATTTAGTGGGTAGTACTGTACAatccttttttatcttttatagCAACAAGAAAAAACACTATAATTCTGTTATTTAGTGTGTAGTGTTGTACCAGGAAAACTGGTACTCTTTTGCAGAGTTGAGTACCAGTTCTTTGGTGTACATGATCATGACCTGGCTGTTTgggtattttgattgatttatCATTTGGTTCAGATGGTTAAGGCCTAGAAAATTATCAGAGATTGTTGTTAGAATTCACCAAAACAGGAACTCATCATTTCAATTTGTTgctcagcctagtcccaggcttACTGGGTTTCCAGTGCTAGTAAATGACTGTGATTTAGTGTTGAGCCCAGGACGAGCACACCACAGGAATGCCTGGGATTTTTTGTTGTTCACACGTTCTTCAGAGGTATCTGCAGACAGAGCCGTAACAGGCCTCGAATtatcaggggggggggaggggcacaatgAGAAAACATTAGGGGCACAGTCATACCCTGGTACTGGTTATTCCCttaaaatttttgaaaatatgtgccccaccccctgctatggccctgacaGATTTTCAGGCCTTGAAACCAACACTTGATTTTGTTCCTTGTATAAAATTGAATAGCGGCACATAGGGAGGTACTATAATTTGTTGGTGAACAGTAGGCACAAGGTATACaccaataaacaaaaatatcaaagttattgtttatttaacATATGCACAATTACTGTGATATAAATTATGCCTAGCTTACATCTGCTGTCTACCAAATTGGTTTATATGTAAAATTATGCCATAAAATGCTTTCTATACCATAACTCTGTCATTATCAGCCTCAACCATTCTTACAATCCATAGCCATCTACAGATTCCATTAACAGCTGTTTACTTAGCGAACAGTAGTAGTAATCAGCTAGCTGATTAGTGACTCTACGCGCACAATATATCTTGGGCCAAAATTTGATTGTGAGAGGTGGCAGCTTTGTGTCAATAAATGTCGTTTTCATAATTGAATTTGGTTTTGAGTGATGTCTGGAATAAACAATGTCATTGATTAttctagcctgctagccggctctcattgtGGGGTATTcagaaatgttttattttcgatgATATATTGGGAACCCTAATAAAAGATGATATTCTACAACTGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008222 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14940 all species →	TMEM219	Transmembrane 219	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039587 all species →	Domain	TMEM248/TMEM219 domain	Interproscan
IPR039493 all species →	Family	TMEM248/TMEM219	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16002 all species →	TRANSMEMBRANE PROTEIN 248-LIKE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032238455.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032238455.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032238455.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

46TPM > 0

16Conditions

38.3Max TPM

20.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	20.05	21.98
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	17.07	22.08
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	18.55	19.60
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	22.04	24.10
whole 6 week old aboral regenerate · regenerate uncut	3	3	16.38	19.40
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	25.35	28.70
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	26.35	38.34
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	22.06	24.00
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	23.25	24.27
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	21.70	23.41
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	20.46	24.42
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	20.15	21.57
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	19.52	20.81
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	15.42	25.96
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	20.02	22.97
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	12.32	21.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	21.98
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	19.66
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.52
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	22.08
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	15.54
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.58
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	19.60
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	19.00
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.04
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	24.10
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	22.61
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.41
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	19.40
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.68
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.07
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	28.70
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	27.80
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.55
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	38.34
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	22.59
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.13
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	24.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	23.46
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	18.71
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	24.27
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	24.09
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.38
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	23.41
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	22.65
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	19.04
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	24.42
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.52
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.44
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	21.57
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.57
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.32
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	20.81
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	20.68
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.06
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	25.96
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	20.31
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	22.97
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.57
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	17.52
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	21.96
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.99
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.