Gene detail

Detailed information of XP_032238654.1 in Nematostella vectensis

Genomic Location: NC_064036.1:9727103...9736567
NR annotation: XP_032238654.1, protein gustavus isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032382763.2

TATATCACACGCTATTCTGATCAGTTTTATTAGTTTCATGCGCTGATTCAGCACACTTTAGGGGGATTGTGGTTTGAAGTGACTCAGTATAAAGGTGCATGCGGGGGCTTGAATGGATGGCACCACTGTAAAAACGTCAGATAGCGGAAGAGCGGGTGAGCAATCATGCTAGATTTCGGCCAAGGTACAACATTGTCTTCGAGACGGCAGAATATTACAAGTTGTGGTAGATCGATCCACAAGGACGGACTCAAGTTGGATTCACAAACTATTTTTTCActacatccccatctctcGACCATGGGATCAAGGATCTCGGCAGTGAAACGTAGCGATCACAACGACAATAGACAAGGAGTTTATAAATCCTTGAACTTTATAAGAGAGGAGGATGATAGAGCAAGAGATTTAGCGAGGCCGGAGAAACTTGACATAGTGTTAGACCGACCAGCGCTACCGGAAGAGAGACAAGCAGAATTCGCGTGGAATCCGGCCGATCGTTCAGTCAATGTGTTCGTCAAAGACGATGATCCGTTCACATTTCACAGACACCCTGTGGCCCAAAGTACGGACTCAATACGAGCTAAAGTCGGCTTTAATCGTGGGTTCCATGTGTGGGAGATTCACTGGTCTACCAGGCAGCGTGGTACACATGCTGTTGTCGGAGTGGCAACTGCCAAAGCTCCGCTACACTGTACCGGCTATCACTCGCTTGTCGGGAACACTGAGGATGGATGGGGCTGGGACATAGTAAGGAATAAACTCTATCACGACGAGAAAGGGAACTCGACCGTCAAATATCCAGCGCATAATGCCGACATAGAACACAATTTCGTGGTCCCTGATAGATTTCGTGTTATTCTCGACATGGATGAAGGAACATTAGCGTTTGAGACTTTAGAAGGGAAATATCTCGGTGTTGCGTTTAGAGGACTAAAAGGACAGACAGTTTACCCTGTGGTATCAGCTGTTTGGGGGCACTGCGAGATCGCCATGCGGTACATCGGCGGCCTTGATCCTGAACCACAACCTTTACAAGATCTTTGCAGACGTGCAATCAGAAAGTCTATAGGAAAAGAAAACTTATCCAAAGCAAACATAAATACACTTCCTTTGCCAGTACCTATGAAGAAATATCTACTCTACCAGCAAGGCTGGTGATTTCTAGAAATGATAGCAAGGGAATGATGGAAATGGCGTCAACATGCTGATATTCAGCCTGACGTTCTCAAAATGAGCTCTGTGGTAAAGTTCCAAAAGCCAATCGCCAAGAAGCTCAAAACTCACCACATCGCAAGCATCTTGCCATCGTCACAGGGGCACAGGTCTTGAGATACAGGCAGACAGTCTTATGCATCGAACATTGGTCATCCAAGTGGCCTAGAACAGGAAATAATCCCACAAATTGATTTTCCTAGTTGGGTTTtccatattttattcttgatTAATGGATTTATATGTCTACAGAAATTGATCAGGTGAACAAATTTATTTCTTAGAGCTTTTATTTGTATGATTCATAAATGCAACTTTCTGGCTCAGAAAAGACGTCTCTCCTGAGAATACTCTTGAAATTTTAGCAGTGTTTCAAATTGCAATGTTTATATATAGTGCATTTATTTGTGGATACACATTCCAGAAAACTGACAAAGTCAGAAAGcaaacatttagaaaaatgACAATTATTTTCCcttttattaatattattaagttatttagtttatttggACGATAATAGCAAAATTTCTTTAGAATGCCTCAAGTTACATTCAAATTGTACATACATTGCCAGCCTCTGTAAAGACTGATTGATTCATCCATTCATAAATTATACCAGGACACTATTATTATCCAGCAACAATGCAAAATGAGTTTTTAATCCAATCAAATGCCTTACCTCATTACCTGTCCATTTTTGCTAAAGTTTCTGAGTTTCAATGATAATTTGGCATGCTACGTAATTTATAAATGAGCAaggttatttatttatgagGCAAAGAAAGCCAGTATACGTATTATTTAATGATATTATATATTGAATTGAAGTTCCTGTTAAAAGACGATGCTGttcttgaaataaaataatttgcaTA

Protein

Uniprot

Gene family

Uniprot term	Description
A1Z6E0	Protein gustavus OS=Drosophila melanogaster OX=7227 GN=gus PE=1 SV=2
Q96BD6	SPRY domain-containing SOCS box protein 1 OS=Homo sapiens OX=9606 GN=SPSB1 PE=1 SV=1
Q9D5L7	SPRY domain-containing SOCS box protein 1 OS=Mus musculus OX=10090 GN=Spsb1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF00622	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR050672	Family	F-box/SPRY and SOCS box protein families	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10343	SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4	-	Ubiquitin system	ko04121	deepkoala