Gene detail

Detailed information of XP_032238947.2 in Nematostella vectensis

Genomic Location: NC_064043.1:8518706...8525077
NR annotation: XP_032238947.2, uncharacterized protein y4mH [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032383056.2

GGGAGGGTAGGGTTCAGGGAGTATAAATAACGAAACAAACGAAGCGACCAGATGGCGGAAGTGCGCGCTGAAATACTCGATTGTCATATCCatatgTGGGATAATAAGACATTTTATTACCCATGGCCTGGAAAGGAGCTGAAAGACATCTACCGGCCATTCTCCCTGGAGGACCTGGAAGAGGAGTTGACAGAGACACCAGTCCGCAAGGCCATGTTTATACAAGTAAACCAGACATATGAAGAAACAGACTGGATACTAAACTTACCAGACGTTAATGGCACCCTTGAAGGAATTGTCGGATGGGTGGATCTCCAAGACCCTAAGCTGGAAAGCATTCTGGAAAGGTATAAAAAATTCCCAAAATTCAGAGGTGTTCGTAACATTCTAGAGGGTGAACCAGACAATGCATGGCTTGAACGACCAGAGGTTCTCAGAGGGTTAGGTATTTTAGAAAAGAAGGGTCTCACATTTGACTTGCTTATAAGGGAAAGGCACTTCCAGATAGCCAATGATGTTGTCAAGAAGTTCCCAAGATTAAAGTTCATGATAGATCATATCGCGAAACCAAATATAAAAGAGGGGGCCATTGATAGCTGGAAAGCAGGAATCACTGAGCTTGCGAAAAATCCAAATGTGTTTTGTAAAATCTCTGGGATGGTCACAGAAGCAGATTTGTGCAACTGGACTAAAGATGACCTCAAGCCATACGTGAAGCACGTGTTGTCAGTATTTGGCACTGACAGGTGTGTTTACGGTTCTGATTGGCCAGTTTGTAAGGTGGCTGGCGCTTCGTACGCTGGCGTGTTCAAGGCATACACCGAGATCATCgcagatcacgtgaccaaaGAGGAGAGGGACGCTATTCTTTGCAAAAATGGAAGAAGATTTTACAATCTGGACAGATTATAGAATATCTAGAACTAAATAATTATAGAATATCAAGAAACAAATAGAGTACTAAATATTTTCGTTTAGATTTCTATCGAACCGTATGAATTGCACAATCTTTTCGCGCAgttttgttttgccaactGGCCTCTCAAGAAAAAGGGATATAGGGGGAGCTCGAATTATCCAAGTTCGGGTTCTCGAGGTTCACTGTATCAAACATTGAGGGGTcatccacactaacacggattcaaaagtCCGGATTCGGTTCGCCAAAAACGCATCACTTGATTCGCGTCCACACTATCGTTTTCGCAGAGTGTTCGTCTGGATCCAGCTGTCCAAACTAACACCGAtttcaaacgtttgaaaacgctgaaAGGTACGGCGTGACGTCATTTTTATGCATGCTCATTGCAGCAGACGCGCCTGCGATATGACGTTATCGTTTTCATTTTCGGACCAAAGTGTACGGATTCATTTTGATTCACTTTCGACGgcgttttcaaaagtatccggattctcTGGATCCAGCGCGCGTGTTAGTGGACGAAAGtcctaaacgtatcaaaaaaGTATATAGATccaaacgaatccgtgttagtgtggaggGCCCCTAAGTCAAGTCAAGATGCCAAACCGGTCAGCATAACTGACAGGTGCGTACCGAGGATTGGTTGAGGGGGGAGGTGGGGGCGCAGTCATATAATAAAAGCATGGTATTTGAAGActctttaataagaaatgccAGCCACTTAGTGGCCgccaaggggagggggggtatggGGAAGTGCGCGTTTCCCCTTGTTTACAAGCCTGTTAGCCTATCCCTACAGATTTCCACATGTATATTTTAGTagattagagtggttttcaaaaaccgtgaaatactatttagtttatttagtactaatactgttatgtctttgttctctcttgtcatggcttgactattacactttaacaactTCAATTTGTTGTACGGAATTTTGAAGGCCATAATACCACCCGTATTTACATTGTCAAGtaaaggggaagggggaggtgcCAGTGACAGGTTCAATGATTTCAGAGGGCCGGTATTAAAATGACTTTCATCGCCATCGGGAGCATATGGAGGGATATCGAAAGTTCCATATATCACGCa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DX22	L-fucono-1,5-lactonase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=Patl_0798 PE=1 SV=1
Q0BGE1	L-fucono-1,5-lactonase OS=Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD) OX=339670 GN=Bamb_1224 PE=1 SV=1
A3LZU8	L-rhamnono-gamma-lactonase OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=LRA2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004620 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04909 all species →	Amidohydro_2	Amidohydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR052350 all species →	Family	Metallo-dependent Lactonases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43569 all species →	AMIDOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032238947.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032238947.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

4.5Max TPM

1.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.95	2.85
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.05	2.28
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.58	2.75
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.31	2.43
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.82	2.08
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.47	1.41
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.05	3.25
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.59	4.52
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.22	2.13
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.16	1.87
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.30	2.64
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.44	2.19
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.04	3.44
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.75	2.26
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.21	2.00
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.91	2.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.85
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.28
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.14
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.73
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.75
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.62
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.37
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.43
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.33
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.16
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.08
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.04
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.41
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.25
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.90
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.52
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.85
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.39
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.13
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.53
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.87
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.62
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.64
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.48
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.78
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.19
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.12
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.44
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.40
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.28
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.26
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.62
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.73
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.