Gene detail

Detailed information of XP_032239202.2 in Nematostella vectensis

Genomic Location: NC_064047.1:11180301...11189239
NR annotation: XP_032239202.2, serine/threonine-protein kinase 40 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032383311.2

GCCTGGGTTCCAGTTCCTTTTCACGAtaacaacaaaatggcggatgtTCGTTTCGTGTTGTTCTAGAAGATGACATCGTGTATTTCAAGAATAATGGACGATCGATAACGACTAATCGAATTTACTGAATTAAACTATGTTCTACAATGCGATCTAGCGCATCTGGCTCTGCTGGGGTCAAGCGAAAGGCATCGTGCACTGAAACCGGCGAGAGTTCGGGTTCTGAGTCGAAACGAAAACGAAGCAGTGCTTTGAAGAGAGCTGGTCCTTACTTACTTGGACCACGACTGGGAAATTCACCGGTCAGAAGCATCGTCCAATGTCTAGCGAAGAGAGAAGGGACTGATGATTTTTACTCGATAAAGATCTTGACTTTGGGGGAACCAGGCCAAGAAACACAAGATGACAAGCAAGGAAAGATGTTACTTCACACGGAGTATTCGTTACTTTCCCTTTTGCACGACGAAAAAGGAGTTGTCCACCATCATGGGTTATTCAAGGACGAGTACGTGGAAGATGTGACTTCGGATCAACTCGAAAGTAGAGTTACAGGCAGTATTTCTCAAGCGGGTTCGAGTAGGACACGATTTCGTACTCGTCATCGTTTGTGTTTAGTTTTGGACTGCCTGTGTGCCCATGAGTACAGCGCCGACACTGCGGACTTGATCAACCTCCAACATTACGTGATACGTGAGAAAAGACTCAATGAACGGGAAGCAGTGATTATATTCAATGACATCGTGCGAGTGGTCGAGTGTCTTCACAAGaAAAACATTGTTCATCGAGATCTAAAGCTTGGGAATATTGTACTCAATCGAAGGACAAAGAAAATCACAGTGACAAATTTCTGCCTGGGGAAGCACTTGATACGAGAGGATGACTTGTTAAAAGACCAACGAGGCAGTCCGGCATACATCAGCCCAGATGTACTCAGCGGTGCCCCGTACTCCGGCAAGGCAAGTGACATGTGGGCACTAGGCGTTGTACTTTACACCATGTTGTATGGACAGTTCCCTTTTTATGACAGCGTCCCGCATGAGCTATTCCGGAAAATAAAGAGTGCAGAGTTTGTGATCCCAAGTGATAGTCCTGTCTCTGAGAACACCAAGTCTTTGATCCGCTTGCTGCTGATGCTAAATCCCCTGAAGAGGTTGACAGCAAGCAAAGTGCTTGGCTTTTTACAAAACACTATGTCTTCCTGGTACTTGACAGCTACCCTAGCTGAGCCTGCACAGATAGTTCCAGATGCTGACGAGgagaacaacaaaaaacaaatcacaGAAGAAGCAACAAGCCACGAAATTCCAACAGGTTTAGAGACAAGGCTTAGCACTCTCAGCGATGATTTTTTTGCGAAGGAACCCCTCGGCACCGTGACCCGTGACGTCATACCTCAACCACCAATCAGACGCATTTCTCAGGACGCACGACCGCTGACCGCTGCTGAGATCCTGGCTCATCGCCATCTTCTTTAGTAATACGTGATATGTTGCTCTGGTGCGCTTATTCAAAAGCAAATGATTCTGGTAATAAGCACGTGATTCAGTAATATCACGCGTGCCATAACACAAGCACGTGATCTTTAAAAATTCGCACGTGATCCAGTAATATTACGCGTGCTAACACACAAACACGTGATCTTTAAAAATTCGAACTCGATCCAGTAATATTATCACGCGTCCTAACACAGCACAACCACGTGATCCTGTGAGATGCGCACGTGATCAAGTAATATTATCACGTGTGCTAACACACAAGCAATGATCGTGTGAGATGCGCACGTAATCGTAATGCCATGTCTTGGCTGGACACGTGACGCACAAAGACTTAAGGGCCGTCTACACGGGCGAGTTTTACTTGACAAGAAAAAGTTGCTCGTGTAGACGGGAAAAGTTGACAAGTTTTTCCTTGACAAGTTCACTTGTTCAAAAGCTGGCGTGTTTGCTTTTACTTGACAAGTCTTACTTGCCAAGTGCACTAAGTTGATCGTGTAGACGCTCAACAAGTTTATCGTAGAAAGTAGTTCATAGGCCCCCTTTTCTCGTGCTTGTGAACTATCCAAAAAGCTGCCATTGCTGCTGTAGCTGGCATGGTTTGTCTCTTTGTCAGTCTGTCTATTTTGTTatcatttgttatttttttttttatatcgccGCTGTCTAAAGGCATTACTAGTTTATCGCACGGAAAACTTGTCCAGTAAAAGTTGCTCATGTGGATAGCACGTCTACACGAACGACTAGAATTGTcaagaaaaacttgtcaagtaaAAATTGCCCGTGTAGACGGCCCTTTATATGTTGTTCATACATGCTCCTACAAGTGACTTTAATAGGCACCCGCGGGAATAAACACTTGACTTTTATATTTTCCATATGTATAGTGGCTACCGTCCTCTAAGATTCTTAGTAGCCAATTCACTTTGCTTGTGCATGTCGCGTTTATTTTACTAGTTTAAACGGATCCCGTTCGCTCGATTTGTAGATTTCCCTTACTTTCTGTCTGTGCCAATGCATCTATAGTCTTCAAAGCTGTAAATATTTTCCCTTCTGCTTGGCTCAAAATTAGCCCTCAGATATtgattatatttatatatattattgtaAGTATTATCTATAATAAAAAGACCCGTTCTATCTCTTTTCAAACGCGGCGTTCGCGCGATTTCATAGTTGCATTTCCGTAACTTTCTGTCTTTGTGCTGATATATCTATTTCTTGAAAGCAGTTTTTTCCTACTTCTTTCCCTTCAGATATTGAATATTACATATTATTGTAAGTATTATctattataaataaaatgtgttttatcaagataaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T0B1	Serine/threonine-protein kinase 40 OS=Gallus gallus OX=9031 GN=STK40 PE=2 SV=1
Q7T0B0	Serine/threonine-protein kinase 40 OS=Xenopus tropicalis OX=8364 GN=stk40 PE=2 SV=2
Q7TNL4	Serine/threonine-protein kinase 40 OS=Rattus norvegicus OX=10116 GN=Stk40 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR024236 all species →	Family	Serine/threonine-protein kinase 40	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR024104 all species →	Family	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22961 all species →	SER/THR PROTEIN KINASE-TRB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16312	STK40, SHIK; serine/threonine-protein kinase 40	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032239202.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

20.5Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	15.87	17.94
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	12.66	17.09
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.16	15.02
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.59	14.17
whole 6 week old aboral regenerate · regenerate uncut	3	3	13.11	14.79
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	10.15	16.62
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	14.31	16.85
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	14.55	17.03
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	10.20	16.08
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	10.99	17.48
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	16.57	17.78
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	11.46	20.48
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	15.57	18.20
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	10.58	17.12
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	17.58	18.36
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.70	17.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.94
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.00
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.68
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.09
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.47
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.42
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.02
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.56
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.91
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.17
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.68
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.91
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.79
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.82
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.72
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.62
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	13.82
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.85
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.38
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.70
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.03
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.46
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.17
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.08
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.54
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.48
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.50
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.78
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.14
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.80
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.48
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.89
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	18.20
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.33
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.16
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.12
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.62
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	18.36
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	17.60
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.77
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.11
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.