Gene detail

Detailed information of XP_032239289.1 in Nematostella vectensis

Genomic Location: NC_064047.1:5719813...5729165
NR annotation: XP_032239289.1, low density lipoprotein receptor adapter protein 1-A isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032383398.2

GTAGCCCATAATATTATCCTGTATATATCACGGATAGATAAAGATAAGCGTACTCTTCGCTGGTACATTGACATAACAGGTTCTTCGAAATAACTCATGGACTCCCTCAAAACTGTAGCTGACAAGGTAAAAAGAAGTCCTCAAGTTATTCGACGGAAGCTCGAGGAAGCGTATGAGAAACGATCACATAGACACGAAGAGTTGAGAGAGGACTGGTTACATCAACCGGAGCCACTCAACGACGGCGTCCCTTTTTACGTCAAGTGGCTGGGGACTCGGCGTGTTTTCGATGCTAAGGGGTCCGGCTGCACTGATGATACTGTCAGGGAAATCGTGGAGGAAGCAAAACATCTTAAAATGTCACACCACGAGGCCAGGCTACAGAAAGTGCTGCTGACTGTATATACCAAGAAGATCACAATCGCTGATATGGAGACAAAGgtgacGAAGCTGGAAGCGCCCATCTACCGGGTTTCCTATTGCACCGCTGACCCCTATTTCCCAAAAGTGTTTGCCTTCATCGTACGTGAGCAGAGCTCGCGTAAATTGTACTGTCACACAGTCCTCTGCAGTAAGGAGTCTATGGCTAAAGCTATAGCGCTGACAGTCGCAGACGCCTTCACCGTCGCGTACGAGTCTGTGCAGAATATAGTACAGAGGACGCAACAAGAAACCTCCCCGCAACACCGCGGCAACCTTGTGGCGACATCTTCCACCAATATCACAAACAAAGTCACAGAAGAGGTATCCGTGCAGCCACAAGATGATGGGTCCAAGTCTTCCCCTTGCTGCGGCGAGTCTAAGAACCCTTTCAGAGCAGACGATGACAACGACGATTTGTCGTACTCTACGACAAACCCATTTACCCAAGCGGAAGTAACGTCATCGTTAACGGAAACCTCCGATGGGATGCCTGCTATCCACGTGGAGGGGTGTGAGAGGGGAATTGTCAATGAAGGATTGGATGCATCACAGCGGATGGAAACTTTGgATTTGACTGTTGACGAAGACTTCGATATGGAATTCACAAGACTTGCCAAGGCGCGCTCAAGCACAAACCTGTTTGAGACGCCAGTGAGACGAACAGACTTCCAGGACGACGTCACAAGTCTCCTAGCAACAGAACACACAGCCATGGACTTTCTCAAATCAGGATCCGCCGAGGACTTATTCGCTACTCATGACCATATGACTTAAACGATGGAAGAAAGAAAGCGCTGGATCCTCAAGCATGGCCTTTTAGTTGTCCTTATCAACAGCAGTACAGGAACAAAAGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATAGCAACATCGGTCTCCTAACAGAGGGATTCATAGCAACATCAGTATCCTAACAGAGGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATGGCAACATCATTCTCCTAACAGGGGGAGTCATAGCAACATCAGTATCCTAACAGAGGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATAGCAACATCAGTATCCTAACAGAGGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATAGCAACATCAGTCTCCTAACAGAGGGAGTCATGGCAACATCATTCTCCTAACAGGGGGAGTCATAGCAACATCAGTATCCTAACAGAGGGAGTCATAGCAACAGGGGTCTCCTAACAAAGAGAGTCATATCAAAAGCAGTCTTCCTTCATCAGAAACCTGAGCAGTATTGACTAGTACCAGTAGTCCCTTAGTAACAGTGGTTGCCATTAATCTCCTAGCAACACGCATAACCTTTGTATGTATCAGTAGCCTCTAACTAAACTAGCTAGTAAGCTGAAGTTTTGCCACACAGctattaaaacaaaatagatTCTAGGAGAAACCGAGTGTAATAGAAGAACTCACCTGTActgcaacaaaacaaaattctttTGTGAGGTTATTCAAcaaaaattttaattaaaaaaatccacATACCCGTGAAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020	Domain	PTB/PI domain	Interproscan
IPR051133	Family	Adapter and Engulfment Domain-Containing Protein	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11232	PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12474	LDLRAP1, ARH; low density lipoprotein receptor adapter protein 1	-	Membrane trafficking	ko04131	deepkoala