Gene detail

Detailed information of XP_032239574.2 in Nematostella vectensis

Genomic Location: NC_064035.1:12576433...12597789
NR annotation: XP_032239574.2, uncharacterized protein LOC5514059 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5514059

ATGAAGCTAACGGTCAGCGATGCCGTGTACAACTACAGGTTTGTCAACAATCTGTGGAATGCTGCCTCAGAGGGAGATCTTAGGTGTCAGGAAAAACTCACCACTCCAATTGTTGGTCACGTGATTAGCCCATTTGCCCCACAGCCGTGTCACGTGACAGAGGCCTGGGGCCCAAGGCAGCCGTATCAGGCTCTGTTCTACCGGCCGTCAGATCACACTATGGAAGCCCCTAAGACAGATCCACTGAATCAGAACCTTGGCTCAGAGTATTCCCCAAGGTTTCATCTGCAGAATACTCACGAGAAAGGCTACGAGACAACAGTCTTGTCTAGCTTTGACAAGAACCTTGAACAGAGTCGCCATCATCGCAGGCAACACTTCAAAGCTGGCACAGTACCTGGTGGCTCCACATCCAATAAGATGATTTATGGTACAAATGAGATGCTACATCAGGAAAATCAGCGAAGAGTGAAGCAACAACAAGAGAAAGCTGATGGATTCCTGTTTGGCACTGATGCCGCCACTAATGTTGGGAAGCAGCAGGAGAAAAGAAAGCCAAATAATGCTTTGTATCTGGAAAACCGAACGGAACTAGACTTCCAAAGAAACAAAAAGTTGGCAAATGAACAAGATGAGTTCATGGAAAAACACATTCAGGAGAAACGTCGCCAGAGGATGCGAGAGCAAGAAGAGAAGAAGAAGGATTTGGAGATGTTGAAGAACCTCAATCCTTGGGGAAGACCCGGCCATGGCGCACCTATGTTTGCGCCCACAGAACAACCAGCTGCCAAGAGAACAAAGGCTGTGAATGAGCTAGTAGGCGAGCACTATCAACCACTGGGAGGTGACGCAGGAGGCGGTAATGTCAACCGTACAGCATCAGGGAAACCCCAGCCGACTTACAAAATAGATCCTGAACTCCGCTTCCAGAAATACAGTGATAAGAAAAACGTGGAGCCTCAACTGAGATATCGTAAGGACATACACTACGGGAAAGAGCTTGATTCCCTTTTGGAGGAAGCAAAATCAAGGAAACAGCTACAAAGACGAGACAGCCTCGAAAAGGAGCTTCGCCATATAAGTCACGATCCATTTGGGAAGCAAGGCGGCGGAGCACCTCTGAAAAACCGAAAAGGCGAGTTGCAAGCTGTGTTCCCAACAACACTCTCGAAAGACATTCAAGAATTACGTCAAGTAGAGCCAAGACATTCGCATGCGTACAATGCTACAAATCAGGAAGATTTCGGGAATTATGACCCTTGGGGTAAAGGTTACGGAGTCCCACGGCGAGACGAGAGGGGTCGATTAATCCGCCAGAACCACAAAGACAACAATGATAACTTGGATGGTGTTGGGATACTTATCGGACGGCCCGGCTGTGGAGCTCCCCTCAAAGATGACAAAGGCAGAGTCCAAGCGAGGAAGGCACAGACGCTCACTAAAACAGCAAGCGGACAGACCTTACCGCGAGAGTTCAGCCCTAAAGGCGTTGAGTGCTATAACCCATTCGGCCGACCAGGGGCAGGAGCCCCCGTGAGGGGTGCTGACGGGACGGTGAAGACACATATCATGGGAAAAGTGGAGAAAGACGCCGTTGTCTTGAACGATCCCAGCCCTCGAACTGACCCAGCAACGAAACACGAATACTTACAAACCCTACGCAATATGACAGAAGAAGCGCGCGAGCAGAGAAAAGCAGAGAAAGAAGAACTCAAAACGGATGGAGCCGATGTCGCGGCGTGGTTACGTAAAGGTGTGATAGGGCAACCCCAATACGACCCAGTGACTGGTGAAATAGTCGCGTCACACAAACACACATCAGATATCACGCAACAGAAACTCAACATCCGTCGACAAAAGAACGAGCTGAGCCATCAATATCATCAAGATCTAGAGAGGCTCGCGCAAGAACGGGAAAAGGACAAAGTACAAAGAAGGGACCTGGAGCATCGCCACTCAAGAGAGCATGTTGACACGATGAACAGCATTTGGGGGCGCCCAGGGGCAGGAGCACCGCTGACCAGGGATCATGTCAAATACGCGAGAAAACAAAAAACTGGCCTTGACCCCATAGACGTGGATAACTTCAGGGATTACTAG

Transcript

rna-XM_032383683.2

ATTAGATCCGCTGCTGGAACACAAGAATTCCATTTTAGGACGACTGTTCTGATCAGAGAATGGCTCACGGTTGTTAAAACTTTTTCTTCGTTTCACGTTACCTGGCATGATGTAGATTTAGCGGCTAGGTGCTTGTGTGGACAAGAACGCCGGTTTTTTTGCCGGTATATTTGGCAACGACGGAGCCAAATTATGAAGCTAACGGTCAGCGATGCCGTGTACAACTACAGGTTTGTCAACAATCTGTGGAATGCTGCCTCAGAGGGAGATCTTAGGTGTCAGGAAAAACTCACCACTCCAATTGTTGGTCACGTGATTAGCCCATTTGCCCCACAGCCGTGTCACGTGACAGAGGCCTGGGGCCCAAGGCAGCCGTATCAGGCTCTGTTCTACCGGCCGTCAGATCACACTATGGAAGCCCCTAAGACAGATCCACTGAATCAGAACCTTGGCTCAGAGTATTCCCCAAGGTTTCATCTGCAGAATACTCACGAGAAAGGCTACGAGACAACAGTCTTGTCTAGCTTTGACAAGAACCTTGAACAGAGTCGCCATCATCGCAGGCAACACTTCAAAGCTGGCACAGTACCTGGTGGCTCCACATCCAATAAGATGATTTATGGTACAAATGAGATGCTACATCAGGAAAATCAGCGAAGAGTGAAGCAACAACAAGAGAAAGCTGATGGATTCCTGTTTGGCACTGATGCCGCCACTAATGTTGGGAAGCAGCAGGAGAAAAGAAAGCCAAATAATGCTTTGTATCTGGAAAACCGAACGGAACTAGACTtccaaagaaacaaaaagttGGCAAATGAACAAGATGAGTTCATGGAAAAACACATTCAGGAGAAACGTCGCCAGAGGATGCGAGAGCAAGAAGAGAAGAAGAAGgATTTGGAGATGTTGAAGAACCTCAATCCTTGGGGAAGACCCGGCCATGGCGCACCTATGTTTGCGCCCACAGAACAACCAGCTGCCAAGAGAACAAAGGCTGTGAATGAGCTAGTAGGCGAGCACTATCAACCACTGGGAGGTGACGCAGGAGGCGGTAATGTCAACCGTACAGCATCAGGGAAACCCCAGCCGACTTACAAAATAGATCCTGAACTCCGCTTCCAGAAATACAGTGATAAGAAAAACGTGGAGCCTCAACTGAGATATCGTAAGGACATACACTACGGGAAAGAGCTTGATTCCCTTTTGGAGGAAGCAAAATCAAGGAAACAGCTACAAAGACGAGACAGCCTCGAAAAGGAGCTTCGCCATATAAGTCACGATCCATTTGGGAAGCAAGGCGGCGGAGCACCTCTGAAAAACCGAAAAGGCGAGTTGCAAGCTGTGTTCCCAACAACACTCTCGAAAGACATTCAAGAATTACGTCAAGTAGAGCCAAGACATTCGCATGCGTACAATGCTACAAATCAGGAAGATTTCGGGAATTATGACCCTTGGGGTAAAGGTTACGGAGTCCCACGGCGAGACGAGAGGGGTCGATTAATCCGCCAGAACCACAAAGACAACAATGATAACTTGGATGGTGTTGGGATACTTATCGGACGGCCCGGCTGTGGAGCTCCCCTCAAAGATGACAAAGGCAGAGTCCAAGCGAGGAAGGCACAGACGCTCACTAAAACAGCAAGCGGACAGACCTTACCGCGAGAGTTCAGCCCTAAAGGCGTTGAGTGCTATAACCCATTCGGCCGACCAGGGGCAGGAGCCCCCGTGAGGGGTGCTGACGGGACGGTGAAGACACATATCATGGGAAAAGTGGAGAAAGACGCCGTTGTCTTGAACGATCCCAGCCCTCGAACTGACCCAGCAACGAAACACGAATACTTACAAACCCTACGCAATATGACAGAAGAAGCGCGCGAGCAGAGAAAAGCAGAGAAAGAAGAACTCAAAACGGATGGAGCCGATGTCGCGGCGTGGTTACGTAAAGGTGTGATAGGGCAACCCCAATACGACCCAGTGACTGGTGAAATAGTCGCgtcacacaaacacacatcaGATATCACGCAACAGAAACTCAACATCCGTCGACAAAAGAACGAGCTGagccatcaatatcatcaagATCTAGAGAGGCTCGCGCAAGAACGGGAAAAGGACAAAGTACAAAGAAGGGACCTGGAGCATCGCCACTCAAGAGAGCATGTTGACACGATGAACAGCATTTGGGGGCGCCCAGGGGCAGGAGCACCGCTGACCAGGGATCATGTCAAATACgcgagaaaacaaaaaaCTGGCCTTGACCCCATAGACGTGGATAACTTCAGGGATTACTAGCTCTATGACTGTATTCTACCGAGCACTTCAACACCATCATCTtatcggcatttttttttacaatggatttattttattgatgATAATAAAAGTGAGCACTGCTTTGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003771 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for XP_032239574.2 in Nematostella vectensis.

InterPro

InterPro term	Type	Description	Source
IPR026708 all species →	Family	Centrosome and spindle pole associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21616 all species →	CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0032467 all species →	Biological Process	positive regulation of cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032239574.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032239574.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

33TPM > 0

16Conditions

15.2Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	1.53	4.58
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.99	4.83
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.39	8.40
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.05	14.50
whole 6 week old aboral regenerate · regenerate uncut	3	3	9.29	15.21
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.92	8.76
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.94	6.39
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	2.19	3.55
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.49	7.51
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.72	13.02
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.93	8.59
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.50	4.23
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.27	3.47
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.67	5.00
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	5.24	8.37
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.94	8.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.58
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.83
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.76
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.40
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.40
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.04
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.74
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.50
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.63
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.00
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.21
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.97
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.70
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.76
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.39
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.43
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.55
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.03
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.51
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.95
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.02
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.13
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.59
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.10
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.11
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.23
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.27
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.47
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.33
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.00
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.37
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.35
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.82
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.