Genomic Location: NC_064036.1:17093806...17100408
NR annotation: XP_001634423.2, spermidine synthase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5514241 |
| Transcript |
| rna-XM_032383781.2 |
| Protein |
| XP_032239672.2 |
| UniProt accession | Description |
|---|---|
| P19623 | Spermidine synthase OS=Homo sapiens OX=9606 GN=SRM PE=1 SV=1 |
| Q64674 | Spermidine synthase OS=Mus musculus OX=10090 GN=Srm PE=1 SV=1 |
| Q9XY92 | Spermidine synthase OS=Dictyostelium discoideum OX=44689 GN=spsA PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002495 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01564 all species → | Spermine_synth | Spermine/spermidine synthase domain | Domain | Interproscan |
| PF17284 all species → | Spermine_synt_N | Spermidine synthase tetramerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001045 all species → | Family | Spermidine/spermine synthases | Interproscan |
| IPR037163 all species → | Homologous_superfamily | Spermidine synthase, tetramerisation domain superfamily | Interproscan |
| IPR030374 all species → | Domain | Polyamine biosynthesis domain | Interproscan |
| IPR030668 all species → | Family | Spermidine/spermine synthase, eukaryotes | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR030373 all species → | Conserved_site | Polyamine biosynthesis domain, conserved site | Interproscan |
| IPR035246 all species → | Domain | Spermidine synthase, tetramerisation domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11558 all species → | SPERMIDINE/SPERMINE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0006595 all species → | Biological Process | polyamine metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00797 | speE, SRM, SPE3; spermidine synthase | EC:2.5.1.16 | Glutathione metabolism | ko00480 | deepkoala |
Transcript abundance of XP_032239672.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
