Gene detail

Detailed information of XP_032239804.2 in Nematostella vectensis

Genomic Location: NC_064035.1:8250290...8254174
NR annotation: XP_032239804.2, uncharacterized protein LOC116619277 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032383913.2

CACACCTCGAGCAAGTTATCCGGAAACAAGGTCGGAAAGGCTCGGGCTCGGATtccgaaatttgacaaaagtctTGGGCTCGGATTCCGAAATTTGACTTAAGTCTTGGGCTCGGATTCCAAAATTTGACTTAAGTCTTGGGCTCGGATTCTGAGACGCGGGTCTCGGTGCCTCGGCAAGTCTCGGATTTACCCGTCGCTGCCCCTAAGGACCGTGGGCTCAGTGTGATATGGTTGAAAAAGGTTATTTTATAAATAGGATAAtgtttatttataataatataaaacaaaaaattatttatagCAGTTATTTATCGTGCTCACAAAGTACTAAAATACAATGACTTGtatttcaaattattctaTGGAAATGGTTTTACCTATAGAAATATGAGAACTTAATATAAACACGATACCATCAAGATCATCTCGTGTATTCTACCCGGATTCTACTCTATCTGACTTGAGTACGTCAATGTTCAGTTATCTCCGGCGTCAATGGATTAGATCTTAATCGTACAATCTCCGCTTGTTCGCACCTACTTATTGCTTTCACCACTCAACTTCAATACAGCTCTCCTCTCTGCGCTAATAGAAAATCACTTAAAACCTGTATGGACTACGACAGCGCCGTAGAAAAGTAGTCAGTCAGCTCTGGGTACCTTTTAGCGTAAGGAATAAAGAGGGTGCAAGTGGCTAGCTACTGCTGTTCTAGCTTGCTGGGTTCCAGGTTGGTTTGCCCTTTCAAAGATTGGATTCACGGGGATGGAATTCCTTACGCGGTTGGAAACCCTAGGATTGTCTCTCCCAGAGGGTTTTCATATGCAAAGCCATAGACTCGCTAATGAGGTCAACAATgacatgtgtttattttatgGACAAAAGAAAGTAGCGCTTATCTACCgaagtgtttttttatctAGACAAGTTTCTAGACACAAATTACTGCCGCGAAGTCTCACATCGCTTTCATTACAATAGATATAGTCGGCAATAGACCAATGGAAAACCTTGCAAGTTGTAAAGACTAGTGGCTCATTAAGCCACGTGATTAGAAAGCAATCGACAATAACAGGAATAAACATGACGGTCTATTCTTGGTCAGTTCATTGTTGACAGCTGAAGAGAGCGAGACCCATGCTCAAAGATATTGGTGGTAACAAGCTGGGAAAGCAGCATGAGTATTTTACGCTAGCTCACGCAATCACAAACCGGAAAACCAAACCGGAAAACCGGAAAACCAAAATTTGAGGCCCCACGCACAATCAAGTACAGAAGAAATTTATACGAAAAGAATTAAGGCGAAATTTGTCAGCTGATAAGAGTACTGTTCGGTCTACGTACATACTCTAGAGAGTTCCGAGCGCTTCCTTCCCTCCATTCAGACAGTCGGAAATCAGTGGTTCCCTCAGCGAGCGTATTTATAATCTGAGTGAGTGTTGGCTTCGACATGGTATGCGCGATACGGAATAAATTTTCCCAGGTGACGTCGCGTCATTCTAGCGAGGATCCTGATCGTAGCTGACTGAAGGCTTTGATGGTGTCTTTGAGGCGGTTCACAGTGTCAACACTCTGGACCATACGCAATACCAAATGgctttctgttgttgttgtactTATCGCCGTCTATACTGTAGTGCTTGTGCTTCAAGCAGGTTTGGGCCTTTTCAAGACACGGTTACGAGAACTGCCCCAGGAGACGTTATCATTGTCGGTTTCCGCTCCACTTAATGTCCAACTACCTCGAGGCATTGATAGAATAAACTACAATCCAGTTGAGTATAGCCATAGTAGGCAAGGGAGTAATCTGGTACCAAAAATCAGAGGACAAAACCTGCAAAGCGATCAACTGACCGGTGCAGATTCCCAAAATGTGGATAATAAGGCGGCGCGAAACACGCACAGGCAAAAATATCTGTTTGTTTTTCGATATTATGAGCAGCTCGGAAGGGCAACAAACAATTTATTGGAGCTGGCTTCATGGGCCAAGCATAGGAATAGCATCGTCGTCGCACCGTTTGTCAATAATTCAAGAATGTCGGGTCTGCCTGGTGGAGTCAGCCATTACTTGCGGACAACCACTTCGTTAGCGCGATTCGGCCCCCTCCGAGAATATTTCGATGTGAAATACCTAAACAATTTACTGAAAAAGAGGGGATACGGGACACTTGGGGGGTTCGGGGATTTTCAAAATGACTGCCAGCAACGCTTAAATATAGttatacattttctttattcGAATCGCGAAGCGCTGTTGGACGCGGCGGAATGGTATCGTAAAACGTACCGGGAAATGAAAGAGATTTACACCAAGACACGCGCTAACGGTGGCTGGCTCCCCTGCCCCTTCGTGCGCTACTCTCGACTACAGAAACAATTGAATTTCAAAGTGAGTAGGTATGTGTGTGTGGACCCGGAGATGATTCAGGATGCATTCGAACTAGAACGAAAGGTCATCCAGGGTCGATTCTGCGTCGGTGTTGTATTATGGAAAGGGAATGGGAAAGGTCGGGTTCACTTTCCCTTGCACCCATCCATCACGAGACCCCTAACACCCCCAGATGTCAGGTTCAACGCCACACTTGTCGAAATCGCAAGGAAATTTGTAGAAGAACGACTGGGTGGTAGTTATATAGCCGTACATGTCCGAGGGGAGCGTCATTTAGTAAGAAAGGGGACAAATATCACGTATCGATGCGTGCGAAAACTGATTGACAGAGTACGCGAAGCGCAGAGGAAATACCACATACAGACAGTGTTTCTCGCTACAGATCTACCAGAGTACGGATCTGACACTTTCGACCAGGAGCGGGGTAGCAGAAAAGCCTTACAGCGGTACCTGCACAAGGAACTCAACCAGCCAGTCTCATACCAACCCGCAGATCTCTACGATAACGGCGCTATCGCCATCATTGAGATGAACATTCTTGCTGCCGGAAATAGGCTCTTCACACTTGGAAGTGGTAATTTCCAGAACTGGATCGTCAGTTTATTTCTACAGAGACGCAAATCAAACTCAAAAAAGCTGCACAGGCTGTGCGAGTTAAGCTAATAATAATTACACGGTATCGATATTTTGATCTCTCGCGCTAAAACAATTAGTCGAAGACTGCAGCTGAGGTTAAGAGATAGCTTGTTTTTCCGCGTCGCAATTTCCATTCTATTTTATCGAGATCTTAGGCTTGATTACTCGCGGTATTTTGGAATTTTGAAGTAATACTCAAAACAAAAGCTATAAGCTCTGAGTTTGCTATGATAACATTCATAGCCGAGTAAAATACATTATTAATAACACATCAGATGTTTCCTATTTTCAAATTCACGCTCCGGGAAAAATATCAAAGACAGACAAGAGACTGTTTTATGAAACGCACTGGCGTCTTTTTCAATGGAATTAATCCCATTTGATCAGGGGCTCTTGTAATTATCTAGAAAAATTCGCGtataattaaacaaaaacgCGAAATCTTTTTATAGCAACCAGCCAACATCCAACCTCAAAAAGAGGTACACTCTATACTTGTGATGTTTCTATGGGGGAATTGTAACCATCTACCATCGTGTGAggtgtatttgttttcagtAAGTGAATTTCGGCCGCGAGGTTGGATGTCGGTCTTGTGGTTTCAGGATAAAGCATGCAACTTtacattttttcatttaagaTTACTCAGTAAAAGTGATAACTCCATTAGATGGTAAAAGCCAAATGATTTTCAATAATTAACAGTAAAAAGGGTTTagaggtttgtaaaaaaaacatcaagttttctggtaaaaaaaaacctcggTCTATTTATTATGTCCATTATTTATCCTTAAATTAAATATTCGAAGTACACTTGTACAACAaagaattattttaataaaaatacagaCAAACTga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000803 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_032239804.2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR045130 all species →	Family	GDP-fucose protein O-fucosyltransferase 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13398 all species →	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036066 all species →	Biological Process	protein O-linked fucosylation	Interproscan
GO:0046922 all species →	Molecular Function	peptide-O-fucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032239804.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032239804.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

10.1Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.56	5.49
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.68	6.75
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.96	4.83
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.03	3.21
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.39	10.07
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	3.39	3.86
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	4.71	5.17
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.59	3.64
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.35	2.53
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	2.09	2.40
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.37	2.68
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.34	4.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.21	6.09
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	3.88	5.44
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.46	4.03
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	4.74	8.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.49
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.56
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.63
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.75
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.71
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.58
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.83
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.18
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.88
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.21
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.11
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.77
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.07
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.08
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.04
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.86
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.46
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.86
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.17
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.72
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.26
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.64
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.12
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.53
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.52
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.40
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.37
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.51
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.68
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.23
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.20
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.28
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.74
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.09
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.90
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.63
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.44
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.12
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.08
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.03
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.34
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.09
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.33
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.81

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.