Detailed information of XP_032239897.2 in Nematostella vectensis

Genomic Location: NC_064034.1:17750274...17770528
NR annotation: XP_032239897.2, microtubule-associated serine/threonine-protein kinase 3 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P0Q8Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=MAST2 PE=1 SV=2
Q60592Microtubule-associated serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Mast2 PE=1 SV=1
Q9Y2H9Microtubule-associated serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=MAST1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002586 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →
PDZPDZ domainDomainInterproscan
PF08926
all species →
DUF1908Domain of unknown function (DUF1908)DomainInterproscan
PF00069
all species →
PkinaseProtein kinase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023142
all species →
Homologous_superfamilyMicrotubule-associated serine/threonine-protein kinase, pre-PK domain superfamilyInterproscan
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000961
all species →
DomainAGC-kinase, C-terminalInterproscan
IPR001478
all species →
DomainPDZ domainInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR050236
all species →
FamilySerine/threonine-protein kinases, AGCInterproscan
IPR015022
all species →
DomainMicrotubule-associated serine/threonine-protein kinase, pre-PK domainInterproscan
IPR008271
all species →
Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR037711
all species →
DomainMicrotubule-associated serine/threonine-protein kinase, catalytic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24356
all species →
SERINE/THREONINE-PROTEIN KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004674
all species →
Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0018105
all species →
Biological Processpeptidyl-serine phosphorylationInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0000287
all species →
Molecular Functionmagnesium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032239897.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032239897.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
46TPM > 0
16Conditions
24.8Max TPM
16.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 20.36 24.78
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 14.77 20.18
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 18.88 19.70
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 14.65 17.80
whole 6 week old aboral regenerate · regenerate uncut 3 3 14.75 16.01
whole 6 week old aboral regenerate · regenerate 4hpa 3 3 16.24 17.89
whole 6 week old aboral regenerate · regenerate 120hpa 3 3 20.22 22.25
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 17.99 19.91
whole 6 week old aboral regenerate · regenerate 24hpa 3 3 18.36 22.33
whole 6 week old aboral regenerate · regenerate 20hpa 3 3 18.06 19.39
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 16.01 17.69
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 18.06 19.33
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 16.25 16.62
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 12.74 21.46
whole 6 week old aboral regenerate · regenerate 8hpa 3 3 19.67 21.20
whole 6 week old aboral regenerate · regenerate 12hpa 3 2 9.66 17.78

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP