Gene detail

Detailed information of XP_032240047.2 in Nematostella vectensis

Genomic Location: NC_064045.1:10085942...10094224
NR annotation: XP_001634703.2, uncharacterized protein LOC5514482 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5514482

ATGGCAACCGTCGCAGATCCTTGCAGGACCACTGTCCCTCCAGAGGTGATGGGCCTTCTGTCGCTAGGCAACCAGCAGCTTAGGCACTGTCAGTCCGAGGAGTCAGCGGTTTTCTTCTGCCGGGCATACGCAATGGATCCCAGAGCAACACAGAGCTATGTCGCAGGAATTTCCCAGCAGGCCTTGCAGACCCTCGTGTGTACCCTGGAAGACTTCTGCGTTTGCGGCACTGATTCTAACGACCTCTTCTCCAAATTTGGTATCGCATTGTCCTTGGAGAAGCTCTGTGATTGGATACTCACACCAGAACTAAGCCCGCGATCGCGAGTTGCGTGGTCTCTGAAATCGAGGCTGCAGATGCAACGGGAGCAGTACGATGACGTCATAACCACATGTACCTCCGCCCTTAAGTTGTTCTCCATCCGGGATATCGCCTTCCTGCTCCAACGTGCCCTTGCGTTTCTTCTCCGCAACGACACAAACAAAGCAGTGAAGGATTTTTTGACCGCGTTCGAGGAAGACTCAAGAGCGACGGAGGCATATATTCGCGATACGCAAGCAACGTTTATAACGCTAATCCTAGACGCTTTTTACGAGATTCTTTCCAGAGTGAAGAAAAGCAACGCGAGCAATACCCAGGGAGAGGACCAGAATAAAGTAATCATTAAGCTTTATCGGTTTGTGTTGATGCTCAATTCTGGTGACGGTGTTGCGTACGCGGAGTGCACCAAAAGCTTGCTGGAGCTTGGCGCGTATAAAGACGCCGCCGTGCTGCTCTCAGACGCGTTGGAGTCAATGGGAGTCCGCAAGGAGACCATTCAGATGGTAATCCAACGCGCCGAGTGCTACCTTCACATTGAAGAACTTGTACTATCACTCAATGATTACGTGACGGCGTTAGAGCTCGACGAGAAAGTCACGCACGGCGCAATTCTCTCGCTTTCGAAGCAGAGTCAGAGCAAACTCGGCGTTCACGCGAAGAGACTTTCGGATGATTTACTGCGTCATTGTCGCATTCAGAGCAAACTGCGCAGCGCGTGCTGCGTGGATATTCAGATAAACGCGGAGAAACTCACGCGGGCCGCTGGCCTGTTTAAGATACTACACGTGCTTGATAACAATAACACGGATGCTCTGGTCCATAGAGCAGAGTGCTACGAACTGCAAGGCAAAAGTGCACAAGCGCTGGATGTCTATAACGATGTCGTTAGGCTCCGCCCTAAATCTTCACGTTCTTACTGCGCACGCGCAGTCTGCTATTTGAACTCGGGCAGTAATGAGGCCGCTCTGAGTGATTATAACACGGCACTCGGTATACAGCCCGGGTGCGCTCGCTCGCTGTGTGGACGGATGCGAGCGCATTTTGCTATCGGGCAGCAAGACAAAGGAATAGCGGATTTGATAAGTGCGGCGAGAGCGGGAGTCGATAGAGTTCTGGACGCGTTTAATGAGCTTCCTACCGAAGTTAAAGAGACCTTTAAAGTGCAGTTGAAGAGTTTTCTAAACAGAGCCATGCAGAAAATAAAATCTGGTGCTTACTCAGAGAAAGATGTTCTCCTTGTTGGGGAAGTTTTAGCGCGTGCTTACAGCACGGATTTGGATTCCCACCTTGCGTTTGTAGAGCTCTTAGTTTCAATGCAAAAAATCGACGAGGCGCAGGCGATGTTAATCCGATTCATCCAGCAGAACCCTGGCGAGTTCCTTGCATCAGTTCACTTAGCGATGCTGCGCATGCGTAATGGTAACATATGCTACGCACTTGACGAACTCACCACCCTCCTTAGAACGGTCGGCCAGGAAAAATTATCCACTGCGATTACCGGGTTCCCTGTGTCCGAAAAACAAAAGGTATCCCGTGAGGCATACTCGGAGGGACTTCGGCTTGTCGGACGGGAAAACGACGGTGCAGCGGTGTCGTATTTCACGCTCGCGATTATTTTGTCGCCAAAGCAGGCGTGGGAGGCTTACCACCAGCGAGGAAAGCGCTACTTTAAGCTTAAAAAACCAAGGCACGCGCTGCAGGATTTTACTGCAGTCCTATCTATGAGACCGAAGCAAATCGAGGCTCTTTGTGGACGCGCTGTCATCAATCTTACCGCGTGTAAATATCAGGAAGCTGTCGGTGACTTCCTCGCAGGGTTGAAAATCAACCAGAAAATGCTGGCGAATTTTCTAAAGAGGCTTCCTGAGAGCTACCGGCGTGTAGCTTTGAGATCACTTGAGGGTTACTTGCAATCGCAATTTGCGTTATTCAACGCGCACGGTACGAAGTCCGAGTTTATAATGCCGTTAAGTCGGCTGTTAGTTGAAGTTGACGGTAACAGTGCGGCGAATCATAGTACGTTCGCAGATGCTTTGTTCCTTGAGGAGGATTACCAGACTGCGGCGGGCGAGTTGCAGAAAGCAGAGCAACTGAGTAAAACACTTGATATGTGCTTATTCGGTAGGTGCGGTCTCGCGCATGTCAAACTTAATGATTACCGAACAGCGGCTCAGTATTTCAGTCGCCTTTCAGAATGTGACGTCGACGGACTAAAGACCATGATTGATGCACTGAACACCAATCAACGTACAGTATTAGCACGAGAGGCAGCCAATCAGGGAACAGAACAGTTACGGGAGTCCAACTTCGCACATGCGCTTTCTTTTTTCAGTGTCTCCGTGTTCGCTACCAGCGGTCAAAAGGGAGATTATTTACGCATGCGCTGTAAGTGTTTGGAGCGGCTCAGGATGTACGACCGAGCAATCGACGATTTGTCAACGGTAATGTCCATGGGAGCTCCTATGATTGGCGATCTTTGCGCACGCGCAAACTTGCATATTTTGAACGAAAGCTTAGTTGCGGCTTGCGAGGATTTTATGACGTCCTTCGATATGAATGATCACGTGACCCTGAACATCATGGAGTCGTGTCCTGGAAGGGATGCCACCGTTAGGGCTTTTACGTGCGCTGCTACCCTTGAGTGTGAGGCAAAGCGGTATTACGAAGCACTAAACTTGTGTGTGTACGGGCTGAAAGTTGACCCCGAGAACGTGGAGTTGAAACGACTTAAAATGAAACTCGAAATGGGTGTTAGTAAATGCTCTATTCAGTGA

Transcript

rna-XM_032384156.2

AGCTTGAATTAGCCAATTAGCAGCGAGTGATCCCACGGTTGTCATCTCATGACATCCAATAGTGGGGGTCATTGACTCAACAAGACACATCAAAGATCAGAGATTTTAAGTAATCGACCAAATCGGCCCCAACCGTGGGAAACAGGACAGAAACGCTGTGTAGTTCAGATCGTTACTATGGCAACCGTCGCAGATCCTTGCAGGACCACTGTCCCTCCAGAGGTGATGGGCCTTCTGTCGCTAGGCAACCAGCAGCTTAGGCACTGTCAGTCCGAGGAGTCAGCGGTTTTCTTCTGCCGGGCATACGCAATGGATCCCAGAGCAACACAGAGCTATGTCGCAGGAATTTCCCAGCAGGCCTTGCAGACCCTCGTGTGTACCCTGGAAGACTTCTGCGTTTGCGGCACTGATTCTAACGACCTCTTCTCCAAATTTGGTATCGCATTGTCCTTGGAGAAGCTCTGTGATTGGATACTCACACCAGAACTAAGCCCGCGATCGCGAGTTGCGTGGTCTCTGAAATCGAGGCTGCAGATGCAACGGGAGCAgtacgatgacgtcataaccACATGTACCTCCGCCCTTAAGTTGTTCTCCATCCGGGATATCGCCTTCCTGCTCCAACGTGCCCTTGCGTTTCTTCTCCGCAACGACACAAACAAAGCAGTGAAGGATTTTTTGACCGCGTTCGAGGAAGACTCAAGAGCGACGGAGGCATATATTCGCGATACGCAAGCAACGTTTATAACGCTAATCCTAGACGCTTTTTACGAGATTCTTTCCAGAGTGAAGAAAAGCAACGCGAGCAATACCCAGGGAGAGGACCAGAATAAAGTAATCATTAAGCTTTATCGGTTTGTGTTGATGCTCAATTCTGGTGACGGTGTTGCGTACGCGGAGTGCACCAAAAGCTTGCTGGAGCTTGGCGCGTATAAAGACGCCGCCGTGCTGCTCTCAGACGCGTTGGAGTCAATGGGAGTCCGCAAGGAGACCATTCAGATGGTAATCCAACGCGCCGAGTGCTACCTTCACATTGAAGAACTTGTACTATCACTCAATGATTACGTGACGGCGTTAGAGCTCGACGAGAAAGTCACGCACGGCGCAATTCTCTCGCTTTCGAAGCAGAGTCAGAGCAAACTCGGCGTTCACGCGAAGAGACTTTCGGATGATTTACTGCGTCATTGTCGCATTCAGAGCAAACTGCGCAGCGCGTGCTGCGTGGATATTCAGATAAACGCGGAGAAACTCACGCGGGCCGCTGGCCTGTTTAAGATACTACACGTGCTTGATAACAATAACACGGATGCTCTGGTCCATAGAGCAGAGTGCTACGAACTGCAAGGCAAAAGTGCACAAGCGCTGGATGTCTATAACGATGTCGTTAGGCTCCGCCCTAAATCTTCACGTTCTTACTGCGCACGCGCAGTCTGCTATTTGAACTCGGGCAGTAATGAGGCCGCTCTGAGTGATTATAACACGGCACTCGGTATACAGCCCGGGTGCGCTCGCTCGCTGTGTGGACGGATGCGAGCGCATTTTGCTATCGGGCAGCAAGACAAAGGAATAGCGGATTTGATAAGTGCGGCGAGAGCGGGAGTCGATAGAGTTCTGGACGCGTTTAATGAGCTTCCTACCGAAGTTAAAGAGACCTTTAAAGTGCAGTTGAAGAGTTTTCTAAACAGAGCCATGCAGAAAATAAAATCTGGTGCTTACTCAGAGAAAGATGTTCTCCTTGTTGGGGAAGTTTTAGCGCGTGCTTACAGCACGGATTTGGATTCCCACCTTGCGTTTGTAGAGCTCTTAGTTTCAATGCAAAAAATCGACGAGGCGCAGGCGATGTTAATCCGATTCATCCAGCAGAACCCTGGCGAGTTCCTTGCATCAGTTCACTTAGCGATGCTGCGCATGCGTAATGGTAACATATGCTACGCACTTGACGAACTCACCACCCTCCTTAGAACGGTCGGCCAGGAAAAATTATCCACTGCGATTACCGGGTTCCCTGTGTCCGAAAAACAAAAGGTATCCCGTGAGGCATACTCGGAGGGACTTCGGCTTGTCGGACGGGAAAACGACGGTGCAGCGGTGTCGTATTTCACGCTCGCGATTATTTTGTCGCCAAAGCAGGCGTGGGAGGCTTACCACCAGCGAGGAAAGCGCTACTTTAAGCTTAAAAAACCAAGGCACGCGCTGCAGGATTTTACTGCAGTCCTATCTATGAGACCGAAGCAAATCGAGGCTCTTTGTGGACGCGCTGTCATCAATCTTACCGCGTGTAAATATCAGGAAGCTGTCGGTGACTTCCTCGCAGGGTTGAAAATCAACCAGAAAATGCTGGCGAATTTTCTAAAGAGGCTTCCTGAGAGCTACCGGCGTGTAGCTTTGAGATCACTTGAGGGTTACTTGCAATCGCAATTTGCGTTATTCAACGCGCACGGTACGAAGTCCGAGTTTATAATGCCGTTAAGTCGGCTGTTAGTTGAAGTTGACGGTAACAGTGCGGCGAATCATAGTACGTTCGCAGATGCTTTGTTCCTTGAGGAGGATTACCAGACTGCGGCGGGCGAGTTGCAGAAAGCAGAGCAACTGAGTAAAACACTTGATATGTGCTTATTCGGTAGGTGCGGTCTCGCGCATGTCAAACTTAATGATTACCGAACAGCGGCTCAGTATTTCAGTCGCCTTTCAGAATGTGACGTCGACGGACTAAAGACCATGATTGATGCACTGAACACCAATCAACGTACAGTATTAGCACGAGAGGCAGCCAATCAGGGAACAGAACAGTTACGGGAGTCCAACTTCGCACATGcgctttcttttttcagtgTCTCCGTGTTCGCTACCAGCGGTCAAAAGGGAGATTAtttacgcatgcgctgtaaGTGTTTGGAGCGGCTCAGGATGTACGACCGAGCAATCGACGATTTGTCAACGGTAATGTCCATGGGAGCTCCTATGATTGGCGATCTTTGCGCACGCGCAAACTTGCATATTTTGAACGAAAGCTTAGTTGCGGCTTGCGAGGATTTTATGACGTCCTTCGATATGAATGATCACGTGACCCTGAACATCATGGAGTCGTGTCCTGGAAGGGATGCCACCGTTAGGGCTTTTACGTGCGCTGCTACCCTTGAGTGTGAGGCAAAGCGGTATTACGAAGCACTAAACTTGTGTGTGTACGGGCTGAAAGTTGACCCCGAGAACGTGGAGTTGAAACGACTTAAAATGAAACTCGAAATGGGTGTTAGTAAATGCTCTATTCAGTGACGATGCAATATTTAGGCACCgaatacgtttttttttatataggcGGACTGCAAGATCATGCATGAAGCTAGAAATGTGTTTCAAATTATAAGTGATTGTAATCTAGCTACATCACAACATAAGCTGTATTTAGGTAGGTTTCCGCTCAATGGAATCGACCAAAGTTTAagtttactgtcgaatccgttgtatcgccacg

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR042161 all species →	Family	Tetratricopeptide repeat protein 34	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44874 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240047.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.