Gene detail

Detailed information of XP_032240072.2 in Nematostella vectensis

Genomic Location: NC_064039.1:3217589...3223910
NR annotation: XP_032240072.2, uncharacterized protein LOC5514673 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384181.2

CCAGGATAACATAAAACACCGCTGGAGCCTTTGCCGTCAAATGGGCGAATGTGATAGGCTGCTTCTAAGTAGACCTTTGGCTTGTCACCGCCAGCGCTCGCTCTTAGCCTATCGCAGCGCACCAACACAAAAGAGGGTTTATCGTGTTGCGGCGTATGCGGCAGTGGCCACCGGTAGGATTGTTATAGCTGGTGACAGCTGAGGCGGCGCCAATCCACTGATGAGTCAGCCGCCTAGACTATCCTCTCCCGCTCCCTTCTCCCCTAGCAGCCTCTACTCGGTTACTTCGTACTCACAATTACGGAATAACAGAACTCCTGGTAATAGCATCAATCTGGCAACAACACTGCGTAGTCCACAACTGGCTTCCATGTATGGAGAGTACAGAACCACAATGGCAGCAGAGCCAGTTGTTCGCAAGTGCACCCCTTTCTGCGACAAGAGCAAGGAATGCCCAGAACACCATGAATTACTGGTATCAATTGTAAATTGTACAGATATGCTTGGGTCACTCTCAAATCTGGATGGCTTGAAAGAGTGTGTGGAGAAGTATGTAAATAAAGGATGGAATCGAGATGATGATGTTCCAGACCCTGTTTTAGAGAACAGGTTTCCTTTGATCCACTGGGCAGCAGCCTTAGGGAAGTGTAATGCATTAGAGTGGATGCTAAGCAGTGGGTTCAGTCCCGTCTCATGCTCTTCAGGAGTTGGTGAGACTGCTCTGCACAGGGCAACTGCATGGCTTCATAAATCACGGCCAAAGTTCACAGTGAAGGAACTAACACcaaaatacaacaaaataGTGGGACTTCTTAAAGAGGCACTAATTATAAAGGATGAGGCCCATGGTGAAACACCCCTACACACAGCATCAGGGATGTTGGTAAATGGAGATCATAAGCCAAACTTTTTTGAGACTTGCATTGAATTGATTGTGAGACATGCAAAAAGGATGCCTGAATGTTTAAGCGCCATTGTAAATGCTgtcaatgatgatggtgacacAGCCCTTCACATTCTTGCATGCGGAGAACGACATAAAATTGAATTCTGTTGTCAAGCAATTAGGACACTTGTCAATGCTGGTGCTGACAGGAGTATTAGAAACAATGAAGGAAAAACAGCCCTTGATATTGCACTTGCAAGAGGAACTGAGTCACTTGTTGAGGAGCTTATCAAGGTAGTTGACCATGATGACTCTAATATTCTGTCTGGTATTGTTCACAATGATGAAAGCTCAGACAGTTTCTGCAACTACAACTCTCTTGCTCACTCACCCTCAATCAGTAACACATCTCCTTCGCTGGAAAGCCCTGTGCCTGGAACAATCAGCGATGGAGAAGATGGTGATGAGCCTTACCCACGTATTGCTCATGTCCAAACAGTAAAAGTTGAGCCCTTAGAAGATGATCAGGATGTCGAGAAGCAAATCCTACAGATGCAAGAAGAACATGCTTCAAGTACAGACCCAGGACTGAATGCTTTGGACATGATGGACAGCTCTGGTTTGCTGCGACACCTGATAGAGGCAGGGCTTCTGCAAGATGTTACCACACTGGTTGGAAAAGCCCGGGCTCGTGATGAAGCTAACCTCAGAAAAGTTCAGATACAAGCAAAAGATATTGAAGCTCAAATCAGCACTAAACTTAAGGAAATTGAGCGTATGAAGTTGGAAGTGAGCTCATTGAAGAACAAGCGCAAACGATGTGATGATGAATGTGACAAACTGCGAAAGCGGTTACATTCATGTGCAAGTGCAATGAAAGAAATCCCCTCGGCCACTGCCACAACTAATGATAAgggacagaaaaaaaatgaggcAAACAACAAGGATTCCTAGTTCCCAGGGCTAAATTGGAGTTTAATTTATTTAAAGAATTTATTAGCAAACTTGCATGTTAGTTTGCCAAATTATAGTCTTTGTACACAATATAAATTGTTTGGCCTTCTATGGTCCTGTAAATAGTCATTTACATGATTTGGTGTTAGAATCCACACAGCCACATGAACAACATTTCAACAGTAGTTGCTACTTAATATTATGatactattgttattgttcacATTATAAAATAACAAGAACTTGAGTGGTTTTCATAAACCTGAAAAACACAACCTGATGTAACCCTTATTCACTGTAACATCTTTGTTCTCCTTTATGCTGGCTTGTACACTTTGTTTTAGGGGTTTATGTAAACCGCTTTGTTTGGAGCTACTTGGGTAGCCCTTTATTAACTGTACACAACATTAGGTCATTTGTTATAAACTAACCTTGACATTTTggctacctgtgttactaTTAGGCTTACTGTGGTACCATTAAGGTTCCTGTACCATTTCAAATGGAGAACACTGTAGACTAGTGTTTCACTAGTCACTCATTTCAATCAACACCTTAAAGTCCCTGAGCAGTGGGCTAGAATTCATTCacttttgataaaaaaaaaggttgtacATATTTGTTACCAGGTGCTGTATGGAATAAATTCATTGacttatta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001846 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051637 all species →	Family	Ankyrin repeat domain-containing protein 49	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24180 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240072.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240072.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

24.1Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.00	15.24
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.37	9.00
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.45	9.59
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	17.73	20.67
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.73	9.45
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	10.03	17.44
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.04	10.26
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.66	9.58
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	10.73	16.22
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	18.23	22.06
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	19.84	22.15
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	13.83	24.15
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.91	15.15
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	6.30	9.88
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	9.39	10.79
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	6.09	18.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.24
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.98
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.80
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.00
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.28
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.82
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.59
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.18
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.58
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	20.67
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.64
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.88
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.45
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.96
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.76
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.44
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.65
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.26
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.87
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.58
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.38
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.02
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.22
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.97
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	22.06
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.38
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.26
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	22.15
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.32
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.05
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	24.15
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.56
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.78
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.15
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.46
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.88
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.02
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.79
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.26
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.12
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	18.27
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.