Genomic Location: NC_064039.1:3341574...3346812
NR annotation: XP_032240140.2, bridging integrator 3 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5514677 |
| Transcript |
| rna-XM_032384249.2 |
| Protein |
| XP_032240140.2 |
| UniProt accession | Description |
|---|---|
| Q9JI08 | Bridging integrator 3 OS=Mus musculus OX=10090 GN=Bin3 PE=1 SV=1 |
| Q68FW8 | Bridging integrator 3 OS=Rattus norvegicus OX=10116 GN=Bin3 PE=2 SV=1 |
| Q9NQY0 | Bridging integrator 3 OS=Homo sapiens OX=9606 GN=BIN3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006097 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03114 all species → | BAR | BAR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027267 all species → | Homologous_superfamily | AH/BAR domain superfamily | Interproscan |
| IPR037428 all species → | Domain | Bridging integrator 3, BAR domain | Interproscan |
| IPR004148 all species → | Domain | BAR domain | Interproscan |
| IPR046982 all species → | Family | Bridging integrator 3/RVS161-like | Interproscan |
| IPR010504 all species → | Domain | Arfaptin homology (AH) domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47174 all species → | BRIDGING INTEGRATOR 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006897 all species → | Biological Process | endocytosis | Interproscan |
| GO:0008289 all species → | Molecular Function | lipid binding | Interproscan |
| GO:0030479 all species → | Cellular Component | actin cortical patch | Interproscan |
| GO:0051666 all species → | Biological Process | actin cortical patch localization | Interproscan |
| GO:0097320 all species → | Biological Process | plasma membrane tubulation | Interproscan |
| GO:0019904 all species → | Molecular Function | protein domain specific binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20120 | BIN3; bridging integrator 3 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_032240140.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
