Gene detail

Detailed information of XP_032240200.2 in Nematostella vectensis

Genomic Location: NC_064044.1:11943018...11946116
NR annotation: XP_032240200.2, protein kinase 4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5514686

ATGGCGCCTATATTGTTAACCAAAGAGCAACAAGACGAGCTTCGAAATATTCGCAGAAAGAAGTCTGGAAATTTGAAATACCCTACTCCATGCAATGAAGACTCCTTTGAGTCATCAAATGGTGGGGTGTCGACCTTGGAGAGACAGGCTTCTTTCGAGTATTTGGTTGAAGAATCGAAAGGACAAAACAGTCTTGAAGTCGAGAGAGAAAACAGAGTGTGGTCGTCTCTCAAGACCTCTGCCTGGATAGCTGAATTTTCTAAGATTTTCCTCAGATCTTCAAACGAGCTAACCAATCTTTGTAAATCGGGTTTATCTGTGGTGAATAGCAGAGAGATCGTCTCAAAATGTTGCGAGGAAGCGGCCCCACCGCTTAGCGTTTGCCTCAGTGACAAAGAGCTCATTAAAGACGAAGAGAACGCCGAGTGTTTGGAAGAGAAAGACTTCTTCGAAGAGACCGGTAGCCCGGTAGAACACGAAGTAGCAGAGAATGTGGAGGACGACTCCAGTCAAACAAAAAAAAATAATGAAACAGAACTACAAGAAGAGGAGCCTCCTTCTGTCGGGGACGCAATGGAATGCAAGGATAAAGAAAAAAAGGGGCGAAAAAAACTTCAGCCGCGACAGAAAATAGGGGTCAAGAAACGCAACGTTTTCGTGATTTTGGACAGTGAGCCAATCTGTTCCCAGCCCAAACGCCCAAAAAAATCTAACAAGACCAAGACATTGAAAAGGAAGTGTGAAACCCCAAGACTGGCGAATGGGAAATTAACTACAGAGAAGAAAAATCACAAATGCAGCCCTGTTCAAAAAATAAGAACAAGTAATGGCGTTGTGGTTCGGCAGGCTCAAGGAGTACATCACCAAGGGTCAGACTCTAAGAGTCAGAACTGGAGGAACACAGGTCCCCGTCACGTCTCATGCTCCGACTCAGGCCTTGGGAGTGGTGATAGCAGTGGGAGTTTCAAAAGCACTGGTGAAAACCCTGAAAACAATGGCAGTGCTGGTGATGGGTCAGGGGATAGAGGATTTCTTGGTGGTGGCGGTGGAGGAGGAGGGAGTTCTGGGGGAGGAGGTGGCAGAGATGATGAAAGCGGTAAGCGCCCTCTGAGTAGTGGGGACATTAACATGGAGGAAGAGTGTGATGATGAGGAGGAGGAGAAGGAAGAGAAGCCTGACCAGGAGATGACATCAGTCGGGTTCTCTGGTAGTAAAGATGTTGAGGAACACAGTGTGGACTGGCAGCACCTTCAATTCGATCCCCAAGATATCCAGCATGTTTACTATAACTGCTTAAAAGAAAACTGTCCAAGAGCAAAATGTGCGTGGCGAGAGAGGAACCATTTTGAAGGACATGACAACAGTGGATGTCAGCGCTGTGTTGCCTTTAAAGGGCACCTCAACACCCATGCTAAAAAATGCTGTCGCCCAGGCTGCAGAGTCTACAACTGTTATGGTGGTCAAAATAAAAATAAAGTGTGCACAGCTCAAGCCCCTCCAAAGAATGGCCACCACAACTTTGTTCACCAGGGCGCCCCACAATTGATTTGTGGGACTGTAATCTATCCACAAATTCCAGGTACCCAAAGAAGATTTCTCACGGAAGGGGTTAACTATCAGAAAAAAGATGTCAAGAGCTTCAGCAAGGGTGCAAACGGAGAAGTCTTTAGAGTTCTTGTAATCTCAGGTGACACAGAAAGGGAATTGGTTCTTAAAGAGACCAACTACTCGCTCAATGTACAAGAGTTGGAAGTATACAAAAGGATGGGCCAACATCCGAACATTGTAGATCACTACTGTATTACCCTTGGTAACCTTAAAGGGTTATTGAACATGAACATATTCATGGAACAATGTGACATGTCCTTGCGTGACTACCTGGATTACATGAAAGCAGAAGGCAGCCAACTGTCAGTAAATGAGGCAATGTTCTACTGGACACAAGTTTGCATGGCTGTTGACCATATACACACCAGTGGAATAATCCACAAAGACATAAAAGCGAAGAATGTGTTACTCTGCCTCAACCAGGGAGAGCTCCACAGGGCAAAGCTATCAGACTTTGACTCAGCAATGTGGCTTGAGCAAGAGTTCACAGCTCCTGGGCTAATGCAGGCGGGGACTAGAGGGTTTGCCGCCCCTGAGGTCATGGAGAAAGAACCTCATGGACGCCCAGCAGACATCCACAGCTTGGGGGTCCTTTTGTTTGAGCTAATGGGTGGTGTACCACCCATTGACAATCGCACAACTCTGAAGAAAAGAGTCAAAGATCTTGGCCAAATCAGCCCTGATGTGAAGCAAATTGTGGAAAGGTGTATCCAAGATGACCCAACCTTGCGACCAACTGTCAAAGATCTCTTGGCGGATGACTTTCTTAAGCAGTACCAGCAAGTATCAAGCGAAGTGTAA

Transcript

rna-XM_032384309.2

TATTTCTCCGAATTGCCGCGCCTCGCGGAGGGCTCGCGAAGATTGATCGCAGTAAGCATCAAAACCAAATTTCTTTAAGACGTTGAAGATACGAGATTATCGAGACACTTCATCTAGAAAATATCATAGAAGTATTTATAAGTAGTTTTTGTATCGTGGAAGCACCAAACCAGGACTTGAAACCTTTCATTTAGAAGCTGGAAAAGACTTCTAAACTTTCAAGATGGCGCCTATATTGTTAACCAAAGAGCAACAAGACGAGCTTCGAAATATTCGCAGAAAGAAGTCTGGAAATTTGAAATACCCTACTCCATGCAATGAAGACTCCTTTGAGTCATCAAATGGTGGGGTGTCGACCTTGGAGAGACAGGCTTCTTTCGAGTATTTGGTTGAAGAATCGAAAGGACAAAACAGTCTTGAAGTCGAGAGAGAAAACAGAGTGTGGTCGTCTCTCAAGACCTCTGCCTGGATAGCTGAATTTTCTAAGATTTTCCTCAGATCTTCAAACGAGCTAACCAATCTTTGTAAATCGGGTTTATCTGTGGTGAATAGCAGAGAGATCGTCTCAAAATGTTGCGAGGAAGCGGCCCCACCGCTTAGCGTTTGCCTCAGTGACAAAGAGCTCATTAAAGACGAAGAGAACGCCGAGTGTTTGGAAGAGAAAGACTTCTTCGAAGAGACCGGTAGCCCGGTAGAACACGAAGTAGCAGAGAATGTGGAGGACGACTCcagtcaaacaaaaaaaaataatgaaacagAACTACAAGAAGAGGAGCCTCCTTCTGTCGGGGACGCAATGGAATGCAaggataaagaaaaaaaggggcGAAAAAAACTTCAGCCGCGACAGAAAATAGGGGTCAAGAAACGCAACGTTTTCGTGATTTTGGACAGTGAGCCAATCTGTTCCCAGCCCAAACGCCCAAAAAAATCTAacaagaccaagacattgAAAAGGAAGTGTGAAACCCCAAGACTGGCGAATGGGAAATTAACTACAGAGAAGAAAAATCACAAATGCAGCCCTGttcaaaaaataagaacaagtaatggcgTTGTGGTTCGGCAGGCTCAAGGAGTACATCACCAAGGGTCAGACTCTAAGAGTCAGAACTGGAGGAACACAGGTCCCCGTCACGTCTCATGCTCCGACTCAGGCCTTGGGAGTGGTGATAGCAGTGGGAGTTTCAAAAGCACTGGTGAAAACCCTGAAAACAATGGCAGTGCTGGTGATGGGTCAGGGGATAGAGGATTTcttggtggtggcggtggagGAGGAGGGAGttctgggggaggaggtgGCAGAGATGATGAAAGCGGTAAGCGCCCTCTGAGTAGTGGGGACATTAACATGGAGGAAGAGTGtgatgatgaggaggaggagaaggaaGAGAAGCCTGACCAGGAGATGACATCAGTCGGGTTCTCTGGTAGTAAAGATGTTGAGGAACACAGTGTGGACTGGCAGCACCTTCAATTCGATCCCCAAGATATCCAGCATGTTTACTATAACTGCTTAAAAGAAAACTGTCCAAGAGCAAAATGTGCGTGGCGAGAGAGGAACCATTTTGAAGGACATGACAACAGTGGATGTCAGCGCTGTGTTGCCTTTAAAGGGCACCTCAACACCCATGCTAAAAAATGCTGTCGCCCAGGCTGCAGAGTCTACAACTGTTATGGtggtcaaaataaaaataaagtgtGCACAGCTCAAGCCCCTCCAAAGAATGGCCACCACAACTTTGTTCACCAGGGCGCCCCACAATTGATTTGTGGGACTGTAATCTATCCACAAATTCCAGGTACCCAAAGAAGATTTCTCACGGAAGGGGTTAACTATCAGAAAAAAGATGTCAAGAGCTTCAGCAAGGGTGCAAACGGAGAAGTCTTTAGAGTTCTTGTAATCTCAGGTGACACAGAAAGGGAATTGGTTCTTAAAGAGACCAACTACTCGCTCAATGTACAAGAGTTGGAAGTATACAAAAGGATGGGCCAACATCCGAACATTGTAGATCACTACTGTATTACCCTTGGTAACCTTAAAGGGTTATTGAACATGAACATATTCATGGAACAATGTGACATGTCCTTGCGTGACTACCTGGATTACATGAAAGCAGAAGGCAGCCAACTGTCAGTAAATGAGGCAATGTTCTACTGGACACAAGTTTGCATGGCTGTTGACCATATACACACCAGTGGAATAATCCACAAAGACATAAAAGCGAAGAATGTGTTACTCTGCCTCAACCAGGGAGAGCTCCACAGGGCAAAGCTATCAGACTTTGACTCAGCAATGTGGCTTGAGCAAGAGTTCACAGCTCCTGGGCTAATGCAGGCGGGGACTAGAGGGTTTGCCGCCCCTGAGGTCATGGAGAAAGAACCTCATGGACGCCCAGCAGACATCCACAGCTTGGGGGTCCTTTTGTTTGAGCTAATGGGTGGTGTACCACCCATTGACAATCGCACAACTCTGAAGAAAAGAGTCAAAGATCTTGGCCAAATCAGCCCTGATGTGAAGCAAATTGTGGAAAGGTGTATCCAAGATGACCCAACCTTGCGACCAACTGTCAAAGATCTCTTGGCGGATGACTTTCTTAAGCAGTACCAGCAAGTATCAAGCGAAGTGTAACATTCTGAGCCTATTAAGGCTTAATGAAATTGAAACTGTAGAAAAATACTGTAAGCTTAAATTTTGTATATTTGAGTATGCCATTAATGtattttgtatgaaaataCATGATGCATTTGACAAGGTTAATATTCTGCTTTTGAAAAGAATATAGAATTTTAGTATACATGgagattttaaattttcatGTCAGTATAGATTAATGTGGTTAAAATAAGTAtgatttttgataaaaatagaATTGTAGTGTTACATGgagaatttttattttcatgtaATAATGACATGTAAAATTTCTCAGTAATAGTTTACATGTAGgtggaaaacaaacatgcTATAGGAATGTTTTCTGCTTTTCAATTATTTGCAGTTTTAATTGATACTACTCATTGCATTTTTAATAATTCTATTTAGCCAAATTGTAGTGAAAAATTACcaaatttaaaacaataaaaaaattagcaATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P1W9	Serine/threonine-protein kinase pim-2 OS=Homo sapiens OX=9606 GN=PIM2 PE=1 SV=1
Q5ZKI0	Calcium/calmodulin-dependent protein kinase type II delta chain OS=Gallus gallus OX=9031 GN=CAMK2D PE=2 SV=1
Q07832	Serine/threonine-protein kinase PLK1 OS=Mus musculus OX=10090 GN=Plk1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004936 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR051931 all species →	Family	Serine/Threonine and Tyrosine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45832 all species →	SERINE/THREONINE-PROTEIN KINASE SAMKA-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240200.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240200.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

21.1Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.14	15.85
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.93	10.16
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	18.44	21.12
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.34	13.99
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.12	7.75
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	14.18	15.35
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	7.48	8.58
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.33	9.55
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	8.11	9.89
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.38	11.99
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.62	10.66
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	7.58	8.45
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	6.60	7.55
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	8.95	10.44
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	7.71	9.65
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	8.46	10.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.85
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.88
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.70
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.16
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.16
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.49
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.12
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.91
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.27
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.99
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.27
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.77
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.75
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.66
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.94
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.18
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	13.02
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.58
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.47
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.38
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.55
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.98
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.47
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.89
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.91
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.54
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.99
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.97
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.20
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.66
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.67
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.53
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.45
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.44
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.85
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.55
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.52
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.73
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.44
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.10
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.32
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.65
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.87
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.62
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	10.10
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.32
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	5.96

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.