Genomic Location: NC_064044.1:12404646...12418195
NR annotation: XP_032240203.1, beta-hexosaminidase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5514724 |
| Transcript |
| rna-XM_032384312.2 |
| Protein |
| XP_032240203.1 |
| UniProt accession | Description |
|---|---|
| Q04786 | Beta-hexosaminidase OS=Vibrio vulnificus OX=672 GN=hex PE=3 SV=1 |
| P13670 | N,N'-diacetylchitobiase OS=Vibrio harveyi OX=669 GN=chb PE=1 SV=1 |
| Q54468 | Chitobiase OS=Serratia marcescens OX=615 GN=chb PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000952 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00728 all species → | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain | Domain | Interproscan |
| PF03174 all species → | CHB_HEX_C | Chitobiase/beta-hexosaminidase C-terminal domain | Domain | Interproscan |
| PF03173 all species → | CHB_HEX | Putative carbohydrate binding domain | Domain | Interproscan |
| PF02838 all species → | Glyco_hydro_20b | Glycosyl hydrolase family 20, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015883 all species → | Domain | Glycoside hydrolase family 20, catalytic domain | Interproscan |
| IPR004867 all species → | Domain | Chitobiase C-terminal domain | Interproscan |
| IPR029018 all species → | Homologous_superfamily | Beta-hexosaminidase-like, domain 2 | Interproscan |
| IPR012291 all species → | Homologous_superfamily | CBM2, carbohydrate-binding domain superfamily | Interproscan |
| IPR004866 all species → | Domain | Chitobiase/beta-hexosaminidases, N-terminal domain | Interproscan |
| IPR025705 all species → | Family | Beta-hexosaminidase | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR008965 all species → | Homologous_superfamily | CBM2/CBM3, carbohydrate-binding domain superfamily | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR015882 all species → | Domain | Beta-hexosaminidase, bacterial type, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22600 all species → | BETA-HEXOSAMINIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0030247 all species → | Molecular Function | polysaccharide binding | Interproscan |
| GO:0004563 all species → | Molecular Function | beta-N-acetylhexosaminidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0030203 all species → | Biological Process | glycosaminoglycan metabolic process | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12373 | HEXA_B; hexosaminidase | EC:3.2.1.52 | Chaperones and folding catalysts | ko03110 | deepkoala |
Transcript abundance of XP_032240203.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 6.04 | 10.01 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 3.78 | 4.71 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 6.00 | 6.54 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 6.63 | 6.93 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 5.76 | 6.06 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 1 | 2.31 | 6.92 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 3.10 | 4.80 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 3.32 | 3.59 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 3.05 | 5.24 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 4.79 | 5.25 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 4.88 | 5.30 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 2 | 2.66 | 4.16 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 2 | 2.20 | 3.47 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 1 | 0.89 | 2.68 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 4.27 | 6.86 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 2 | 6.38 | 12.95 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
