Gene detail

Detailed information of XP_032240440.2 in Nematostella vectensis

Genomic Location: NC_064040.1:4120001...4126228
NR annotation: XP_032240440.2, abscission/NoCut checkpoint regulator [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384549.2

ATGGGCGAGAACAGCAAAATACTTCATGCTCGAGAAATATGGGATCAAATCCTTCAAAGGAAGCATCAATCGAAATACAAGAAGTATCTGGCTGAGCAATGCTCCGCTGAACCAAGTGTTTGTGGGCGCTCATCCAATATGGCATCCTCTCTGCAGTGTTTTGGTTGTGGTGCGGAGTTTGGATTTTTCAAGAGAGAGCATGGCTGTAATAACTGCGGTCGGTTGTTCTGCTACTTTTGTACCACAAAGACCATTGTGCTACCCAACAAAggcaacaaaaaacaaaaagtgtGTGATAAATGCTATAAGGAGCTTACTAGACCATCGAATGCCAACAACAAAGGATCTGAGAAGCAGAGTCTAAATGATCTCAGTCAGGGAAACCAGACAATAAAATCTTCTTCAGTCAAAGTTGCTGTGATGAATATTCCAGTGGATGAAGAAGATGGAGCAGTAGCGCCAAGTGCTACTAAAAACAGCAAGACGCAATGTGACCCTGATGAGCAGATACAACAAAGACTACAAAAACTGAAAGATGATGGCCAGCATAGGGGCACAGATGCAGACATTGGCAAGAAGTTTGAGGAACTGACAGGGAGAAAAGCTATCAGCATGCAGCCATCATCAGATCTTCTGAAGCCACGGCCAAGGAAAACTGAGACAGAGCAGACCAGTGACCTTATCAAGCAAATGAAGGATGAGTGTGCTGTAGACAGCGGAGGTGGAATAGACACTACAGATGCCCCCACCAAAGATTTAAACGAGGAAGATGAAGTTGATGCGCTAATAAGGAAAGCAGAAGAGGAATGTCGACTAGAGGGGGCCACCGCTTTAGCTGATCAGGACATAGAAGCTAGGCTAGCCAAGCTGAAGGACATAGATCCAAGTTCCTACAAGACTCCTGCACCCATGGAtgttgatagtgatgatgaggaAGAGATGAACAGAAGATATTTGAAACAGGTGCTTGGAGAAGCTCTGCTTGAAGACAAAACAGAATCTTTAGGTTATGATCCATCTTCAATAGGGAATCAAAGTAAAAACTCAATGGATCCCCCTAAATTGAAGAAAGGGAAGGCTTCCAAGGGCAAACATAACGAGTCCAGCACCAGCACCTTTAGCAAAGATTATGAGGCTGACAGTGATGACGACGAGTTGCCATGGTGCTGTATCTGTAACGCCAATGCAGTGTTGAGATGTCATGGCTGTGATGATGACTTGTATTGTAAAAGATGTTATAGgGAAGGTCACAGCAAAGACGACTATGATGACCACGAAGTGTCCAGTTTTAGACCTAAAAAGGGCAAAAAGAGATGATGAATACATCCATGTACGTCATGTCAAAGAATTAAATAATTGTTTAAGTAAGTTGTAAGCTAGTGCAGTTGTAAATATATATTGAACAGTATTTCTGTAAGATTGTACAAAATATTGTAAAGCCATTATGGCAGAAAGTTCCTAAAAAATGTTGGTGATGCATTCAGTTTTTCTCTAACATCTTAATTTCGGTTTTCATGAAAAATGATTTCTTAGAGTCAATGTGCAACAATGATCtgatgtttttataaaatttgtttaaaaagatTTAAAACATCTGCATTGACAGTAAAACAATGTTAATAGAGCATTTATGGTAAATGTGACAAAATGGAAACTATATACACAAAAGCTTCTTTTATTTGTCAATACCAGCATTAACTTGCTAAAAAGAAAAGTAACAGTTCCTTTTTGCTCtgataatattttgttttacaaatTATCTGTATTTTTTCCAGGCAAATATTTCTTATACTGCTATGAAACTTTTAGCTTTCTTCGAGAGGGGACAGCATATGTCACCCCAacctaagaaaaaaaaatagctgtTGCTGATTGAACATCATCCAAAGAATACTAATTCAGAGGTTTCATCAGGACCCGGCAGCCGGCGGAAGCGCCGGCTATTTCCCACCAAGCGCCGgctactttttcttttaaattcgacttaagttttattttaacaagaaaGATTAAATAACCTtcaccccctacttatcactctccaccgcctactctgaaagtAAATGTAAGCCCTACTAATTGTAGcctgtttataaaaaaaataacaactttGCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96K21	Abscission/NoCut checkpoint regulator OS=Homo sapiens OX=9606 GN=ZFYVE19 PE=1 SV=3
Q9DAZ9	Abscission/NoCut checkpoint regulator OS=Mus musculus OX=10090 GN=Zfyve19 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044553 all species →	Domain	ANCHR, B-box-type 1 zinc finger domain	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46603 all species →	ABSCISSION/NOCUT CHECKPOINT REGULATOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0009838 all species →	Biological Process	abscission	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032154 all species →	Cellular Component	cleavage furrow	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0044878 all species →	Biological Process	mitotic cytokinesis checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24778	ZFYVE19, ANCHR; abscission/NoCut checkpoint regulator	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240440.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

6.0Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	1.71	5.13
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.81	4.67
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.51	4.03
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	4.27	5.03
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.75	4.09
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.45	4.36
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.91	4.47
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.44	5.27
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.89	4.75
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.19	3.32
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.54	3.84
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.20	5.74
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	3.00	4.96
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.99	5.96
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.91	4.60
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.34	4.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.13
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.67
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.75
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.02
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.03
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.92
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.59
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.03
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.43
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.35
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.09
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.81
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.36
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.47
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.25
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.27
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.51
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.55
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.75
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.92
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.32
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.26
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.84
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.73
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.05
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.74
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.86
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.96
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.03
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.96
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.60
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.13
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.02
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.