Gene detail

Detailed information of XP_032240512.2 in Nematostella vectensis

Genomic Location: NC_064039.1:6739249...6742397
NR annotation: XP_032240512.2, stabilizer of axonemal microtubules 2 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384621.2

AGGAGGTCGCAACTGCGCGCGCGTGGCAACAAGGAGACTAAGCGCTTTCAGTAGCAACGAAATAAACAGTGCCGCTTGAGTTTACGGAAGGACGGTGAAACTTGGTTAATCTTCGCCGCATTTCGCAATTTCTGATGAGAATCTGGTAGCACAACAACGAAATGGTCCAACCACTTTGTATTTGCCAGATCTGTACTTGTGGGCGGCATCGATGTGCTCACAGACCCGAAACTCGGGGCCCAACACACAAATGTCTTTTTACTGAATATCAAGATCGCTACAAAGATCATCCCTTTGGCGAACGAACAAAACCAATCAAACCCGACCGATCGGTGAGGATCTCGGACGCCCCATTAGAGGACAGAACTCACTACAGGCTCGACTATATATCGCACAAGTACGCGCCACccaagaaaagagaaaaagatcGATGGATAAAACCGGACGGTCGAGTCGAAGATGAAAGCACATACAAACACGACTATCCTGGACGTATGGTTGCTCCAGCTGAATCAGCAAAGCCGGCGTGCACCTACCAACCGCACGATAAGCCATTCCAAGGATCCACAGTCCATCAAGACACTTTCAGGCCTTGGGATCTGAATTTGTCACGCGTGAAAAGCATGAAACCAGACACGCAATCTATGGCACGAGATGGAAGAATGGATGGGAGGACGATCCATCAGACCGATTTCCCAGGACATTCAGTACCTAGGAGGCCAGCAATCAGACCTCCTAACTCAGATCTCAGGGCAAACTCTGGGCCCATGGAAAATGACACCACAACCAGACTGGATTATACCAAGAAACAGATTTTGCCAGCTCAGTCAGCCAAGCCAGTGTACCGTAGACCATCCACTGGACCCCCCTTCCAAGGGATTACCACTTGTCAGCATGACTTTGGTTATAAGACTGGTCGTCCTGCTGCAAGTTTCAAGCCGCAACAGGGGGCTCAGCAATCTAATGCCCCCTTTGAGGATTCGACTACGACTCGTGAGTCCTATCCCAAGTGGGCAATCCCCAAACGGCAaatgagagagaaagaggCATACCGACCTCCTTCAGGAAAGTTTAAAGATGATACTACATTCCGCCATGATTACCCTGAGTGGAATGTTGGTCCAGCACAGAGTGCAAGACCCCCAGTGCAGTCATTTGCGTCCAACCAGCCCTTCCAGGACAGTACCACACATAGTGATACTTATAAAAAGTGGGCTGTACAAGCTGTTCCTAAGAGTACAAAGCCAGAAGGATACAGGCCACCTTCAAGAAAATTTGAAGGCGAATCCACAATGCAGAGTCATTTCCGTGGGCAATATGGTCCAAGGTCTAAGCCAGTCCGACAGGAGATGAACAGGCCAGCAACTTCAGGACCAATGGATCTGCATACTACATATGATGATACATTTAAAGGACTACATCCTCCTCCATGCCCTGCTGCTACTATCCGCCAATGGGAGAAGACTCCACAGAATGGGTATTCATATGTGTTTGATTCTAAAGGCCATAGCTTTTACAATCCTCTCTCAGTCTCTGTACAGCCGTTGTCTTTGTCTGCTTAGTATTTTTAGTGctaaattttatattttgtggtTTTTAAATACACAAAGCAACACATTAAATGATGGGAAAAATACACTAGAAAAGTTCAATCAGATCAATATAATTTCAAATATCATTCAAAGAACAAGGTCTTTACTTTAAAATAACCAAAACATTCTAATTTCTCAAgctaaaaaatatatccaaatgtaaacaaaacatGGTAACTATGTTGAAGCTGTAGATGCCTATCTTATACCTATTTCTGTAAACACAAAGGACTGCAAGATAAAAAGAGCTTTCTAGAGCAGCAGCCTGCTATGTGTATTTAATAACCACAGTAACATTCGTCATTAATTGGCAGGGGTTAAATTGTACATAGTAAAATCAAATATGGTAGTTATTGTAGGTACTGTAGGTGTCAATCTGTAACAAGTTTAATAATTTAGAATTTAAATTCAGTACACATGACCTTACATATGTATATCTATCTCAACAATTagttgtacatattttatatatGTCATACAATTCAAAAGATGGAGAAAGTACTAAGGTATATGGTATATATTAACAGGTATACAAAAGTTTTTTCTTTAGTCAcaattaaatataaaaatgcaCAAGCATAACTTTACCTAAAATTTGAATCTCAGCATTTTTTACAGTTTTGTTAAATTGCCCCTATTTTGGGTGTCAGTTTTGGAAACAATCTTGTAAATGTACAATATATGGTCTATTTATTAGTGGTTGTTGGAGTTTAAGTCTGACAAATCACTATTTATCCTGAGATTTGTTTATAACAAGTCTTTTTATTCAGGGTTTTTAattatggatattttcttCAATCATAATTATTCTATTGGTACATCTTTGCATCTTGTGTTAATACAGCTTTTGTCATATCAGAAAATTACAAAATTTTCATCCTTCCATAACATGTACATGACAAACACAAGGCCATATATGCATTTgtcaatacaaaaaaataatttacctGCACTAAAGTAAATTTATAGCTAGAAAGTACTATACTGCAATTTATATAGAAGCTGAATATACCAAACTATATCAGGGAAGTTAAGTGTAGAGTAGTTTAAAAGGAAGAGCTATTTTAGTCATTGCTTCCAATTTCTTGCAGAGGATGTAATTTCTTTTTACCCACATCGAAGAACTTCGAGTTCAGTGTAGCTACCAACTGAGGCAGAGATAGAGCAGAATGCTGAAGGACGGGCCATATATGGCATGGACAGTAATTGAAAGGCAGCAACGGggactttttttttccaaaaaactttattttattggGGATTGTAAATAGAGAAACAGGAAATGCAGGAAAATAGTTGACTACTACAACAAATATGAATAGCCTTAGTTTCATTAAACAGTAATAAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008310 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05217 all species →	SAXO1-2	Stabilizer of axonemal microtubules 1/2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033336 all species →	Family	Stabilizer of axonemal microtubules 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31516 all species →	STABILIZER OF AXONEMAL MICROTUBULES 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25472	SAXO; stabilizer of axonemal microtubules	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240512.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

40.4Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.70	13.12
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.93	6.93
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	15.91	24.65
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	21.38	22.54
whole 6 week old aboral regenerate · regenerate uncut	3	3	17.10	40.38
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	16.44	29.61
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.73	7.25
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.72	14.63
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	9.04	19.47
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	16.74	32.10
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	12.42	18.91
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	4.13	6.41
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.92	5.15
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.48	13.43
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	5.28	10.98
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	7.01	21.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.12
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.48
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.52
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.93
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.44
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.42
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	24.65
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.34
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	22.54
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.13
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	20.48
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	40.38
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.70
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.22
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	29.61
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.19
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.53
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.25
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.94
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.63
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.09
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.44
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.47
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.65
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	32.10
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.30
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.81
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.91
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.25
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.09
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.41
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.97
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.15
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.90
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.72
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.43
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.98
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.85
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	21.03
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.