Gene detail

Detailed information of XP_032240516.2 in Nematostella vectensis

Genomic Location: NC_064039.1:6813709...6816424
NR annotation: XP_032240516.2, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384625.2

GAACGCCTGTCGAAAATAAACATCACCCGTTTAATTACGTGGCGAAATGATAAACTTGTCAAATCTTTATTCTGTGTCTCCACTTTGTCGGCTATTGGACAGGTTGTGTTAGCAAAGATGTGACTGTGCTTTTACAGGCGTACAAGGCATGGGTTTTCGACCATTGTCGCCCAGAAATCTGATTATTTTCTCAGTGATCAGTATCTGCTTAGGATTAATTTGGCTGATGAAAAACTGTTTTGGAGAGTTTTATGTTTCTAGGTTTAGACCCATCAAAGGAGTTCAGTAGCCAAGTACACAATGTCAACCTCCAGAGTTTGAGGAAAAGAGAATTACACCTCAACGTATGGGAAAAAGagattaaaagcaaaatgaAGCTTTTGGGGATTTCAAGTATGACATTATTATCAAGACAAATGCCTCTCATTTATGTTGTTACTCCAACCCACTCAGCACTGACTCAAAAAGCTGATCTAACGCGGCTTTCACAAACGTTGCTACACATTCCGCAAATGCACTGGATTGTTGTGGAAGACTCAGAGATTAAAACACCTTTAGTTACCAATTTTCTGCATCAGTGTGGAAATAAATACACTCATTTAAATATCAGAACTCGTAATGAGTCAATACGAAAAGGAAGAGAGCCAAGATGGCTGAAGAATAGAGGTGTTGATCAGAGGAACTTAGCACTGAGCTGGATGCGGGAACATCACAATCCTAAGCATGGGAAGGCTGTGGTGTActttgctgatgatgataatactTATGATATCAGAATATTTGAGATGATGAGATACACCAAGGGTGTGTCTGTCTGGCCTGTAGGAATTGTCGGTGGTCTGATATGGGAGGGCCCTATGTGTAAGGATGGTCAAGTAATCAAGTTTCATACTGATTGGCTGCCAGAGCGACCTCTTCCTCTTGACATGGCTGGGTTTGCTATCAATGTACAACTTTTACTGGACAATCCTTCTGTTAATATGGACCCTTTTGCCAAGAGAGGTTATGTAGAATCATCCATTGTTGGCCAACTTGTGACCAGGGAGGATCTAGAACCTTTGGCAGATGACTGCACAAAGGTTCTTGTGTGGCACACACAAACAGCAACACCAAAAATTAAAAACGAAGAAAGGCTGCAAAGATTGGGGAAAGGTTCACCAACAATGGAGGTTTAGTGATAAACATAATAAAACAATTTCTTAAAGGAATCAAACATGGCAAATTAGATTtggcttttaaaaaataacaagaaatatatatacaatataaggtttaaatcaattttattagaaccctacaacaacaacaaaaaaatgaagctGGATCATCAAGCAGATTACAATATGGCAATATCAACACACATATGGCACTATTTGTATATACTATGCCACATATGTCATATTATATATGATTTGAGATATTTGATATATATTTCTTCACAAAATTacatataaataatatataaaacCGAATTTACATTGTCAATTTTTGTTATGGTAGTTCCTGCCAATGACCATTTGGCGTTTTAAACGCTTCAGCACTTAGATCTTATTTTAGTACTTTTAACTTTAAGCCCCATGCAAACAGTGCCAAAATGAAATGGTCAGTATTGTCTTTCTGGACTGACCACTTGACAAAGGGCATGGTgatattttctttgtcttgtggATGGTAGAGCGAGACTGTTAGCACTGTTTTCAAAGAGCTTTAGTCCCATCCCTTACATAATTTGTCCAAATTATTGTATTCTTGAAGGCTTACCCCTACACCTAGCCCCTTCTCTTCAACGCCTCTTGATTAAATATTAATAAGATGTAGAGCCTACAAACTCCatgtatattatagcatgtatATTATATATCAGACACGATCTAGATCTAGATTTATGCATAGATGAATTTGTCAAACTATATTGACACAATCGTATTTCCACTTTTAAGTTAAAATTTTCTCTTCACTTTAATTTCTTGaacttttttatcttttctcaAGTGTCACGAAAATACGAAATATACCAACGAAATTGTTCGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94766	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens OX=9606 GN=B3GAT3 PE=1 SV=2
P58158	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus OX=10090 GN=B3gat3 PE=1 SV=1
Q9WU47	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus OX=10029 GN=B3GAT3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03360 all species →	Glyco_transf_43	Glycosyltransferase family 43	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR005027 all species →	Family	Glycosyl transferase, family 43	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10896 all species →	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0015018 all species →	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050650 all species →	Biological Process	chondroitin sulfate proteoglycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10158	B3GAT3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3	EC:2.4.1.135	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240516.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

8.4Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.65	4.12
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.22	4.00
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.84	3.23
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.91	3.19
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.91	3.19
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.71	2.14
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.51	4.32
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.93	8.41
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.53	4.21
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.50	3.83
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.20	3.82
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.25	3.42
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.33	3.70
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	3.04	5.20
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.27	3.75
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.48	4.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.12
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.83
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.00
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.45
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.23
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.23
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.86
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.42
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.19
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.99
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.55
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.19
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.02
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.52
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.14
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.32
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.20
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.41
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.32
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.07
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.21
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.37
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.83
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.67
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.82
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.50
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.28
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.42
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.34
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.70
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.29
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.20
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.93
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.75
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.07
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.43
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.