Gene detail

Detailed information of XP_032240545.2 in Nematostella vectensis

Genomic Location: NC_064039.1:7159510...7172270
NR annotation: XP_032240545.2, transmembrane anterior posterior transformation protein 1 homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5515019

ATGGCGGACGAAGATTTGGAAGATGGTACTTGCTCACCAACTTGGAGCGATTTGGATGGTGTTTCTGTTTGTACTACGCCAGAAATTCCAAGTGAGCAGCAAAAACAAACAACCAAGGAAAGCTACGATGAAGATAAGTTTACAAATGATGGAGAATTTCTAGAGGGAAATACACCGGAAAACTACGACGATAATATTTTGAGAGATGATTCTGATAGCGACATAAGACTAGAACCTATATCATCTGAAAAGGATGGTAAACAATTCGCGGCTTTAATACATGAAGAGTCAGATAGCAGGACATACGGTTACACATCAAATGGGACGCCGCTATCTTTCGCCGAAGAAAAAACTGATGCTACGAACAAGAGTGAACAAGAACCTATTTTAGTTTTACCAGATTTAAATGGCGATGATATCAACAACATCGCAGAAAAAGATATACCGCGACTTCTCTCAGATCCAGAAGGCACGGAATTCAGGCATAGACATGTCAGCGAAAAGGTGCCACATGTCGAAGAGCTTCCACAAACCCCAGAGGTTAACCCGCCATTAGAGCAAGGCCAAACAGCTGTGCGAACTGAGAAGCCACTGAGGGAAGACCGGTCAAACAGAGGTCTTTTAGTCCCAAAGCACAGCCTAAAAAATCTTTCATTTTTAAAGTATTTTGTGGATGAAGTATGTCGAGGGTATGTCTTGGAACTTGATGAGGACAGATATGCAGAGAAAAGAGAAAAGGTTTATACTTTTCTTAAAATACCAAGAGAAGTTGAAAAGCTCATGACGTTTGGTTTCATGTTATGCCTGGATTGCTTTGTATTCATCTTCACCTTTTTGCCAGTCAGGATGGTAATTGCTGTCTGGAAACTCGTAACTGGTTTCTTGCTATGTAAAAAGACAAGATTATTGGAGCCTACACAAATTTGTGATCTATTAAAAGGCTGTATTATGATGGTTGCATGCCTACTTCTTGAGTATGTGGACTTCTCTGTCTTGTACCATATTGTGCGGGGACAGTCGGTTATCAAGCTTTATGTCATTTACAATATGCTAGAGGTTGCTGATAGATTGTTCTCGTCATTTGGCCAAGATATCCTCGATGCACTTTTCTGGACAGCAACAGAACCCAGAGACAGAAAAAGGCAACACATAGGCACACTGCCACACTTTGCACTTGGAGTTTTCTATGTGTTTCTTCATGGCGTCCTTGTGCTGTTCCAAGCAACCTGCCTTAATGTTGCTGTTAATTCCCACAATAAGGCATTGCTTGTCATCATGATATCCAACCAGTTTCTAGAGCTGAAAGCAAGTGTTTTTAAAAGATCTGAGAAAAACAACCTTTTCCAGATGGCATGTAGTGATATAAGGGAGCGGTTCCATTATCTTATATTGGTTACTATTGTTGCTCTGAGGAATTTAACAGAGTTCAATTGGAACATGGACCACCTTTACATCATCATGCCATATCTTCTGGCTACTTTATCCTCAGAATATTTTGTTGATTGGGTCAAGCATGCTTTCATCACCAAGTTCAATGATATTCCAGCTGAGGTCTACAGAGAATACAGATCACGTCTTGCACAGGATGCTACCTCAAGTCGCGAGAAAAATGCCCACTCGGACCATTTCGACTTGGTGTCGCGTAGGATGGGTTTTATTCCACTACCTCTCGGTGCACTGATAATCCGCGTCGTCAAACACTCTATCCACATCCACGGAGTCGGAGGAGTCGCACTAGCCATGTCAACATACTTCTTTCTTCTTTCTCTCAAGATCCTGAACAGTATCGTCTTACTGGGAAAGGCGGCCACTTACGCGACAGAGTTCCCCGCAGAAGACCCCCCTAAGTCCGGACCAGTTCCACCGATCCCAAACCCTAGAAGTACCCAGGCCCCGCAATCCAGCGTAGCTTCTTCCCAACATGCACCAGGGTCCCAGCCAGACCAACAAGGCGGCGGCAAAAGCCAAAATGGCGGCAACGGGAACCGAACAAAAACACTGGCTGAGATCGACCGGTACACCCTGTGTAGCAAGGAAATCGTAATATTTTAA

Transcript

rna-XM_032384654.2

GCAGGcttcgaataaaaaaaaagtccaaACAAAAACATGGCGGACGAAGATTTGGAAGATGGTACTTGCTCACCAACTTGGAGCGATTTGGATGGTGTTTCTGTTTGTACTACGCCAGAAATTCCAAGTGAgcagcaaaaacaaacaaccaaGGAAAGCTACGATGAAGATAAGTTTACAAATGATGGAGAATTTCTAGAGGGAAATACACCGGAAAACTACGACGATAATATTTTGAGAGATGATTCTGATAGCGACATAAGACTAGAACCTATATCATCTGAAAAGGATGGTAAACAATTCGCGGCTTTAATACATGAAGAGTCAGATAGCAGGACATACGGTTACACATCAAATGGGACGCCGCTATCTTTCGCCGAAGAAAAAACTGATGCTACGAACAAGAGTGAACAAGAACCTATTTTAGTTTTACCAGATTTAAATGGCGATGATATCAACAACATCGCAGAAAAAGATATACCGCGACTTCTCTCAGATCCAGAAGGCACGGAATTCAGGCATAGACATGTCAGCGAAAAGGTGCCACATGTCGAAGAGCTTCCACAAACCCCAGAGGTTAACCCGCCATTAGAGCAAGGCCAAACAGCTGTGCGAACTGAGAAGCCACTGAGGGAAGACCGGTCAAACAGAGGTCTTTTAGTCCCAAAGCACAGCCTAAAAAATCTTTcatttttaaagtattttgTGGATGAAGTATGTCGAGGGTATGTCTTGGAACTTGATGAGGACAGATATGcagagaaaagagaaaaggtTTATACTTTTCTTAAAATACCAAGAGAAGTTGAAAAGCTCATGACGTTTGGTTTCATGTTATGCCTGGATTGCTTTGTATTCATCTTCACCTTTTTGCCAGTCAGGATGGTAATTGCTGTCTGGAAACTCGTAACTGGTTTCTTGCTATGTAAAAAGACAAGATTATTGGAGCCTACACAAATTTGTGATCTATTAAAAGGCTGTATTATGATGGTTGCATGCCTACTTCTTGAGTATGTGGACTTCTCTGTCTTGTACCATATTGTGCGGGGACAGTCGGTTATCAAGCTTTATGTCATTTACAATATGCTAGAGGTTGCTGATAGATTGTTCTCGTCATTTGGCCAAGATATCCTCGATGCACTTTTCTGGACAGCAACAGAACCCAGAGACAGAAAAAGGCAACACATAGGCACACTGCCACACTTTGCACTTGGAGTTTTCTATGTGTTTCTTCATGGCGTCCTTGTGCTGTTCCAAGCAACCTGCCTTAATGTTGCTGTTAATTCCCACAATAAGGCATTGCTTGTCATCATGATATCCAACCAGTTTCTAGAGCTGAAAGCAAGTGTTTTTAAAAGATCTGAGAAAAACAACCTTTTCCAGATGGCATGTAGTGatatAAGGGAGCGGTTCCATTATCTTATATTGGTTACTATTGTTGCTCTGAGGAATTTAACAGAGTTCAATTGGAACATGGACCACCTTTACATCATCATGCCATATCTTCTGGCTACTTTATCCTCAGAATATTTTGTTGATTGGGTCAAGCATGCTTTCATCACCAAGTTCAATGATATTCCAGCTGAGGTCTACAGAGAATACAGATCACGTCTTGCACAGGATGCTACCTCAAGTCGCGAGAAAAATgccCACTCGGACCATTTCGACTTGGTGTCGCGTAGGATGGGTTTTATTCCACTACCTCTCGGTGCACTGATAATCCGCGTCGTCAAACACTCTATCCACATCCACGGAGTCGGAGGAGTCGCACTAGCCATGTCAACATACTTCTTTCTTCTTTCTCTCAAGATCCTGAACAGTATCGTCTTACTGGGAAAGGCGGCCACTTACGCGACAGAGTTCCCCGCAGAAGACCCCCCTAAGTCCGGACCAGTTCCACCGATCCCAAACCCTAGAAGTACCCAGGCCCCGCAATCCAGCGTAGCTTCTTCCCAACATGCACCAGGGTCCCAGCCAGACCAACAAGGCGGCGGCAAAagccaaaatggcggcaacgGGAACCGAACAAAAACACTGGCTGAGATCGACCGGTACACCCTGTGTAGCAAGGAAATCGTAATATTTTAAGTCTAAAAATTGGACTGTGATATTCTTGAGTGTAGACGTGTGAAGTTGGTGTGTGGTGACGCCATCCACACAAGACTCAATTTTAAGAAAGTTTAATTGACGTGAAAATTTGGACAGGATTATCCCACCACTAATAGCTTACATAACAGTAACTTGGGAACCATTTTTGATGTCACGccaagaattaaaaaaaaacgttttatgCACAGTCCATTTACGGATCACGAATCGAGAATATCATCGGAAATATTGagatataataaaatattaatttcTTTATCATGGGCACTAAAAGTCCTAATGCTGTCGAGTCTGTAAGTTTTTTAAATACCGTTGTAGGCCTGTGACCTTGAGTTGTTTGTAAGAGTGAGGGTTTCCTAAAAAGGTTTTTATGCCGGTAGTTTTGAGATGCCGCTAGACCCAACGTTTCGCATGATAAGTAACAAGTAATGAGCTATAGTAATGAGTACGATTATTTCTCATTATGTTAGCGGTTATTTATTACGGGCCGCTAATTGCGCCGTTGTCTGTACTCTTCCTTAAATGATGCCGCTAACGACGAGCGAAAAGTCAAAGCTTGTGTCTAGACGGGGACTAAACGCCGAAAGCGAGCCGTGTTACGTCGGTATTTCTTAATTAAAAAGCTGCAAAGTTTGTCAGTAGTTCATTATTTAAAGCAGGAGAGTaagtattttaatattttatcaGAATATTATGGCGGTAGCTGATTCCATTAGGCGTGTactgaaagttttttttaaacacgtGTTCTCACAGTTGATTGCATCTACCGTTATTATAAACTCAATCAAATGTTGCTGTATTTTACTCATACATAGAAAATAGCGTAATTTCAAAACCCTGATATCTTATCCtatagatatatttttgtgggTTAAAGGTGTAAACAAAACACGTTTATTCGACTTAAAACAAGTGACCTAAGGaatataatttgatttgatatAGAATGACAAAATTACTTGTGTGTTATAATGacgaaataaaatttaaaagacGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NXT6	Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens OX=9606 GN=TAPT1 PE=1 SV=1
Q4VBD2	Transmembrane anterior posterior transformation protein 1 OS=Mus musculus OX=10090 GN=Tapt1 PE=1 SV=2
Q5ZLG8	Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus OX=9031 GN=TAPT1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005137 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05346 all species →	DUF747	Eukaryotic membrane protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008010 all species →	Family	Tapt1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13317 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0045724 all species →	Biological Process	positive regulation of cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240545.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240545.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

10.5Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	7.59	10.48
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.94	6.88
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.26	3.68
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	5.48	6.98
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.00	4.94
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.99	5.97
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.92	6.14
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	6.96	8.62
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.49	7.28
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	4.49	6.90
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.77	5.91
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	7.29	9.55
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	4.32	6.48
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.05	9.16
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	4.25	6.92
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.11	6.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.48
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.73
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.55
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.88
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.37
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.56
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.68
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.39
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.72
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.98
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.75
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.71
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.94
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.96
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.11
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.97
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.14
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.62
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.62
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.29
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.97
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.28
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.19
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.90
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.58
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.91
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.73
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.66
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.55
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.77
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.54
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.48
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.47
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.16
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.92
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.82
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.32
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.