Detailed information of XP_032240555.1 in Nematostella vectensis

Genomic Location: NC_064039.1:6932773...6943840
NR annotation: XP_032240555.1, nucleosome assembly protein 1-like 1 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28EB4Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis OX=8364 GN=nap1l1 PE=2 SV=1
Q4U0Y4Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis OX=8355 GN=nap1l1-a PE=1 SV=1
Q7ZY81Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis OX=8355 GN=nap1l1-b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004598 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00956
all species →		NAPNucleosome assembly protein (NAP)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037231
all species →		Homologous_superfamilyNAP-like superfamilyInterproscan
IPR002164
all species →		FamilyNucleosome assembly protein (NAP)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11875
all species →		TESTIS-SPECIFIC Y-ENCODED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006334
all species →		Biological Processnucleosome assemblyInterproscan
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032240555.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240555.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
0TPM > 0
16Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 144hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 0hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 2hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate uncut 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 4hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 120hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 36hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 24hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 20hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 72hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 60hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 48hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 8hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 12hpa 3 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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