Gene detail

Detailed information of XP_032240628.2 in Nematostella vectensis

Genomic Location: NC_064039.1:6862287...6868514
NR annotation: XP_001635183.3, fibroblast growth factor receptor-like 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384737.2

AAATAATAGAGGCAACCGCTGTCCAGAGCCATCCGTCAAACTGCAGTTAAAAAGCGATTTGAAAAAGCCAAGAATCGCAAGACTATTCCTTCAATAAACGTAGCAGCAGGATGGGCATAACAATTCTTCCTGGTGGGTTTTTACAAGTGAAAGAATGATGGCTACCATAGGGTCGAGTTTGTGACGTCACTGGGATGACCGATGGCAAGTTTCATCATCGTACCTGCCATGGTAACCATGGTGATGGCGTTAACCATACCAACCAGAGGGATTTCGTCGCCAAGAGACGCTTACAATCTTACTCAGATAGAGAGGTACATCggcgatgacgtcacactcAGTTGCCCCAATCATAGCTATCAGGGGAACTTTTCCATCACGTGGTACAAGTACAATGAACCATTGCAGGAAGTGACGTACCGAGATGCGATAAATACCCGGATGTTGATACTTAGTAACCTGTTGTTGGCAGACGGAGGACGGTATACCTGTGTCCTGAAGACCGAATCTAATAGAACTCTTAATACGTCTTACATGTTAACTATAAATGATCACTCTCTAAATAAGAAGCCTTCGATCATTACCCACTCAATAAACCAAACCGTAATTATTGGTAAAACTGCGACTTTCACCTGTACCATAACAAGCTTCTCAACGCCTTACATCGAATGGTTCCTCCACTCTACACGCTATCAAAACACAGCCCAGGCAAACTCCAACACATCTTACTTTCACACAAGGTCAAGTTTAAAGCGCATGCGCGGGATCATGACCGTGCGGGAGGCTGGTACGGGTGCTGGACGCCCTTACGAGATCCTGCTTCGCGTGGTTAACGTGACGTACCGTGATAGTGGGTGGTACTCGTGCCGCGTGTTTGACAAATATGGGAAAGCATTCAAACAGGGATTTCTCGCCGTTACTCAAGCGCCCACTTTATCACAGCAAGATCTCCAACTGCAGTACACACGGCGATACGCCGACAATCCCAAGGTCCCCCTCGCGCTGCTGGTCTCACTGCCAGTGGGTGTTCTCGTTATCGCATGCGCAGTGCTGGTACGCGCGCTCGAAAGATCCAAACGCGCCAATGCGCAACAAACCGGAAGTAGTAAACAACCAGAAGAAGATTCGTCTGCACCTTCGACTCGTAGAAATCCTGTAAATCATATTCCCTCCAACGGCGTGGGGACCTTTTGTAATCATTATCCACCATCAGTTGCCATAGGTAGCCATGTCAATTATCATCCTGCATCGTTTGGTATTGTGCGgggaaataacaataataggACTTCAGTGAATAGTTATCTTCAACAAGACTGTGAGGTTGGTCAGCAGTGTCATACATTAACGAGCAGTCAGTCCGCTTCCACGCCGGATGTGTGGCCAACAACAAGTAGTGATCAGCGCGACAACAGGCAACGTGGTCAGCAGCCTACAAGCAGTGGTCTCCATAGTAGTAGTGACTTGAATGTGACGTCACCGACAAATCGACTCAGTGTCTCTAGCGCAACCCTTGACATGGAATGGGAGGGACTGGACCTTAAAATCACCGAGAGTCTGGAGCTTGTCAAGATGCCTGTAGAAGTAGACGTATAAACGACtacgggatacctgtggcgaTACTATCAGAGCAGAGGAATGTTAACTAGTAGCACAACGACCTCTGGGAAATTTACAGAATAGTTTCAACAATTCCTGAATATTCTTTAGATTATTACTGCGAAACGTAGCACATACGACCAATATTCTGATGCATTGAAAGATGAATTAATTGATCTAGTTTATAGTACGAAAAATCCTTTTAGATGCGTTTAACTtaccattttttaaattaattgcCTTCGGGAAAATGATCACTCTATTTGCATGGGTGTTGCTCAGAGAAAGAGTGGAATGTTGTGCAGCTAAAAAGCAAGGACTGTCTTCCTACCGTAATTACtggaataagcgcctccccagAATTAGTGCCTCCCCCCAAATTAGAATCTCCTCTAAGCGTGCTGCACTCCTGAAACTTCGATGATGGGGGGACTCGCGTTAAAAATGAAGTAACGAAAACTGACAGTACTACCCACCAAAGCATTCTAGAATTGGAAGCTTTACTCGCTGTACGTTGTAAAAAACACTTTATCTAGATTTAAATTGGGTTTTGAAATAAATGCTCACCCCGCGCGCCTTCCCTGGGACGTATGGCGTctgggcgcttattcgagaaTTACGGTTATTGCCAGTTTAGCCATGCCCTACTAATCGATCTATTTACTATTTAACTATGTTCAACAGCGTTAAGCAAGAAAGAACTGTGACTGTTGCCGGCAACATGAACATTAAATGGATGATATAAAAGAATGATGTaaactacaacaaaacatatttCTTAAAAAGAGTTTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008681 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR052615 all species →	Family	Fibroblast growth factor receptor-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19890 all species →	FIBROBLAST GROWTH FACTOR RECEPTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032240628.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240628.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240628.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

33TPM > 0

16Conditions

3.0Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.36	1.07
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.08	1.68
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.90	1.17
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	0.42	0.53
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.01	1.23
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.16	0.49
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.68	1.16
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	1.62	2.98
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.32	0.64
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.24	0.49
whole 6 week old aboral regenerate · regenerate 16hpa	3	2	0.34	0.52
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.63	0.97
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.79	1.33
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.29	0.87
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.50	0.82
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.32	0.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.07
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.68
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.92
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.63
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.17
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.79
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.53
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.40
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.32
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.23
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.09
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.71
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.49
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.16
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.89
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.98
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.44
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.44
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.64
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.32
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.49
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.23
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.52
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.50
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.90
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.33
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.05
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.87
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.82
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.67
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.95
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.