Genomic Location: NC_064039.1:14598644...14619923
NR annotation: XP_032240673.2, cytoskeleton-associated protein 5 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5515140 |
| Transcript |
| rna-XM_032384782.2 |
| Protein |
| XP_032240673.2 |
| UniProt accession | Description |
|---|---|
| Q14008 | Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3 |
| A2AGT5 | Cytoskeleton-associated protein 5 OS=Mus musculus OX=10090 GN=Ckap5 PE=1 SV=1 |
| Q9PT63 | Cytoskeleton-associated protein 5-A OS=Xenopus laevis OX=8355 GN=ckap5-a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002782 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21041 all species → | XMAP215_CLASP_TOG | XMAP215/Dis1/CLASP, TOG domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021133 all species → | Repeat | HEAT, type 2 | Interproscan |
| IPR045110 all species → | Family | XMAP215 | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR034085 all species → | Domain | TOG domain | Interproscan |
| IPR048491 all species → | Domain | XMAP215/Dis1/CLASP, TOG domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12609 all species → | MICROTUBULE ASSOCIATED PROTEIN XMAP215 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000776 all species → | Cellular Component | kinetochore | Interproscan |
| GO:0000922 all species → | Cellular Component | spindle pole | Interproscan |
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| GO:0007051 all species → | Biological Process | spindle organization | Interproscan |
| GO:0007052 all species → | Biological Process | mitotic spindle organization | Interproscan |
| GO:0008017 all species → | Molecular Function | microtubule binding | Interproscan |
| GO:0030951 all species → | Biological Process | establishment or maintenance of microtubule cytoskeleton polarity | Interproscan |
| GO:0035371 all species → | Cellular Component | microtubule plus-end | Interproscan |
| GO:0046785 all species → | Biological Process | microtubule polymerization | Interproscan |
| GO:0051010 all species → | Molecular Function | microtubule plus-end binding | Interproscan |
| GO:0051298 all species → | Biological Process | centrosome duplication | Interproscan |
| GO:0061863 all species → | Molecular Function | microtubule plus end polymerase | Interproscan |
| GO:0015631 all species → | Molecular Function | tubulin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16803 | CKAP5; cytoskeleton-associated protein 5 | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of XP_032240673.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
