Gene detail

Detailed information of XP_032240707.2 in Nematostella vectensis

Genomic Location: NC_064039.1:15218588...15222553
NR annotation: XP_032240707.2, uncharacterized protein LOC116619735 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384816.2

CTCCTTCACTGCTCATTTCAAGCTTCTGTGGTCAAGAAATGTCTTCCTGTTCGAAGCTGCACGGAAGtccttttctttattttgtttatggcTTCTTATAGCTATTTTCGCATACCCAGATTACTTACTACGGCACTTTGGTCTTAAAATTACCGATCGATTGAGATTTTATCGGATTACATGTTAATACCCGTAGGTTGGATTGAAAAATTGTGTTCTCTATAAAATTCCCAAAGCCCCGAGGGACCTCGCGTTTCTTCGAGTGTGATTAGCGAATCTGTCGCCCGAGATTATACAAGACCCGTTGTATAAGGTACACAATTACAATGTTTTTTATGTACTAGAGATCGAGTGTGGACCGAGGACTGAATATTTTGCGATCAGGGACTTCTAATGCTTCAATCAAGAGTTTCACCATTAATGGCGGACATGAATTCAGACGAGAATTATTCTGACGCTAGTATTGGCAACGGGTCCACGTCGAATGGTACGGATTGGGAGAAGCAAATGCTTCAGGCTTTACAGGACACAGCACCACCAGAACCTATAAGACTTGCTTGCATGAAACCCGTGCCGAACAGACCTGGTCATTTCGGAGAAGAATTCCATGGCAAGATTTCACGTGAGCAAGTTGTCGAGCTGCTCACAGGCGCGGGAGGTACAGTCAATGGACGATTCTTAGTTCGAGAAAGCTTATCAGCTCCCGGAGATTATAGTTTGTCTTTAACATTTGGTGGTGAAGTTGAACATTACCGGCTATTTTACATAGATGGGATGTATTCAACAAGTAAGACAGATGAAAAGAGGTTTCCAAACATTGTTGACTTAGTTGTTGACATATTAGAATTGCAAAGGCGTTTAGTTCATGCAGAGAAACCGCCTTCCATTGATAATAAAGACATCCGAAAGAAATCTAATCCTAAAGTATCAGTGCATGATTTCAAAACGCATGACTACAAACAGCCAAAATGGTGCGATATCTGTGGCAAGTTTATGTGGGGATTGAAAGGTCAGGGATTAAAATGTGCTACCTGTGGTATGAATATACATCAGAAATGTCATAAGGACGACTCTAGACCATGTGTCCCTCCTCCACccaaggataaaaacaaaccaAGAAAAAAGAGCAGTGTTGGATCACCAAGAGACTCCACAATTTCAGTTGAAACATTTAGAACTCAGTGTTACTATCAGGAGAGCTGCGTGCACTTCCTTCAGCATCTAGAACTGCCTGTTAGTTTATTTGATGTTACAGCACTAAGTCCATGCTATTGTGATCACTGCTGTCAAGAGGTAGAAACGCCGCTTTACAAAAGTGGTGATCCTGCTCGCGAGTACTCTATACCAATGGGTTGGTGCAGGTTCCAGCTTGCGGCATCTGACAAACCCCCTGTTAACACATGCTCCTGGAATATGGCATTTATGTCGCTAAAACCAAGTGATGTTATAGATGTTCTTCAGACAAAGTTTCAATCAGAGCCTGAAAATTCCGGCCCTGAGATGGGTAATTCACTCACTAAATTAACACCTTCAATTATCTGTGCTGATCTGGACTCTGAGAAGCTGAGATACACGGATCCAGAGAATGACAGCAAGAGGGCAGGTCAGATTGTGCTACAGGTTTACATCCAACCATTCTCATATAGACTTATGGGCAGAGTTGGTTCTGTGGAAGAAATAGACCCTTTCTTCAAGAAGGATTCTATTTACTGGGTCACCAGTCAAATGTGTTATGTTGTACCATTTGCTTTGCTTGTGAAAATTATGGATGCTACCTATCTGCAAATATAAAGctttattttaaaaaaacaagccTCCAGGACCTAAAGATGGAGTGGATATGGTGTAGCAAGAAAATGTTAACTACATAGTTAGTTTAAAAGGAAGTTGCATAGTGTTTCATGTTAAGGAAATTTGCTTATAGTAAGCTTGTCAGGTTTCCTGTTTATGTGTAATTTTAAAACCGTGGCAGTGATTTCAGTTTTTATTTCAGCTCTTTCAGTCtgtcattgaaattttgaTCAGGTATGACaggaaatattgttttgtaagCTTAAGGTTTTGTCCTTTGAAAGTGTATATTTCTATCCATCTACATTTCAATTGGTGCCACTCTTCTTATCATACCAGATTTTAATACTCTTGTCATGTATGGCATCACCCATTCAAAATATGGAGGAAATAGAGGCTCAGACGTTTTATGGAATTGATGTGAAAAAGATCAATAACACTTCCGGAAAACAATGGTAGTTTGATGGTCCGGTGCAGCGATGGGTAGATGCTaagaatatataaatatttagaCTCAGTGATaggaaatatatatttattaattCTGGAAAAAAACAAGGTGTGAAACTACTGTGAATGGttgttgaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62993	Growth factor receptor-bound protein 2 OS=Homo sapiens OX=9606 GN=GRB2 PE=1 SV=1
Q60631	Growth factor receptor-bound protein 2 OS=Mus musculus OX=10090 GN=Grb2 PE=1 SV=1
Q5R4J7	Growth factor receptor-bound protein 2 OS=Pongo abelii OX=9601 GN=GRB2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240707.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240707.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

28.6Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	14.34	23.89
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.52	10.24
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	11.29	15.69
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	11.11	14.01
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.41	9.07
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	11.48	16.56
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	11.56	16.99
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.66	14.01
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	8.22	12.81
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	11.36	12.47
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	11.92	12.48
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	16.44	28.60
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.19	10.38
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.88	13.01
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	5.68	9.57
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.10	12.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	23.89
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.48
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.64
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.24
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.46
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.87
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.69
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.98
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.22
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.01
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.70
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.63
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.07
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.13
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.02
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.56
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.57
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.33
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.99
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.40
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.29
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.01
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.26
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.71
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.81
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.85
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.47
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.30
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.33
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.48
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.06
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.23
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	28.60
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.51
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.21
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.38
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.12
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.06
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.01
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.63
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.57
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	12.29
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.