Gene detail

Detailed information of XP_032240732.2 in Nematostella vectensis

Genomic Location: NC_064039.1:15082170...15096564
NR annotation: XP_032240732.2, UHRF1-binding protein 1-like [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5515115

ATGTCTGGTTTGGTGAAGAACCAGATCGCGAAACAGCTTGCAAGGTTTACGAAGAACCTATCGCCCAACAAGATTAGCGTCAAGTTCCTCAAGGGCGAAGGCGAGCTTCACAACCTTGAGTTAGACGAGAAGATTCTCTCCGACTTGTTAGAATTACCCCCGTGGCTTCGCATCACCAAAGCCGATTGTAATAAAATTTCAGCAAAGATACATTGGACTAAACTCAAAACAGATCCTATATGCCTGTTCTTAGACTGCGTGCAGATAGATATAGAGCAAGTTGTTGTTGCTGAATCAAAGCATTCTCCAAACCAGTCATCAACTCAACAACCACCTCAGCCAAACAAAGAGAAGGCCACTAACCAATATGGCTTTGTTGAGAAAGTTGTGGATGGCATGTACGTCCAAATCAACTCAGTCTTGGTCTCATTCAAAGCCCCAGAGTTCTCAGCAAACTTTCAGATGTCCAGGCTTATAGTCCAGAGCACAACACCAGACTGGAAGCCAGATGATCTCAGAAATACTCGCCTAAAGGATGAGACTAAAGGGGAGGTGCTCACATTCAAAGAAATTACTTGGTCTACACTTAGAATTGATGCTTTCGCCCGAGAACAGGACAACAGCAATACAAATTCAGCTCCCATTCGGTTAATAACCAGTCAATCATCACTTCACATCACCATCAAGAAACGTATTGAGGATTGTTCGGTGTTGTCAGCTTGCTTGAAGCTTCTATTGGATGATATCTTATGGGTGTTGACACAGACACAGCTACAAGCACTGATGAAATTCATGAACTCTGTGAATAAAACCATCGAAGAAAACAGGAGGACTCAAATAGAACCGGCATCTAGTACCACACCCACAAGCCAAGCCTCTCAACAGCACACACATGCTCAATACTCGTCATCCAATCTGCAAAATGGACCTGATAAAAAAGAGAGTACTACACCTTTCTCAAAACATGATTTACTTGAAACTTCTTACCACCTTAGAACTGGAAGAATTGATCTTCATCTAAGTGACGACTCTTCAGAAGTTACACCATCTGATCCCTTGTCCGGAGGGGCCATGCAAATACGGATTAACAAACTAGCAACAGACTATTACCCATACCATTTAGCGGGCACATCAAGGACTAGCTGGGAGTGCCATAATGAGGCATCTCTCTCCCGTGCCTATTGGGTCAATCAGTTGTTAAATACATTTAGAAATAATATTAGGAACAGGAAAGACTCCATGCCTCCAAGACCACCCAAGCCAAGTACTAATGGACAAGCATCTGTAGATGGTCAACTCAAGCCACCAAGTTCCCCATCCCCTCGAAGACAAACTGGCCCACCCAGTCCTAAACCATCCCGTCAACCGCCGCCCTCGAGTCCACAGCGCATTGCACCCACCCCAGGTCATAGGAGACCTGTGTTCATGTATGAAACATGCATGTTGATTCGTTGTGATGAGTTTGCTGTAATGCCAGTGACTACATATAACCAGCACAATGAGGGAAATCCATTCCTGTCATCAGACAAGAAGGCTTTGTACCTCCCCACTGATATGCCTGCATTCCAGATAGACTACACCCAGTATTACTACCCAGGAGAGATCACCTCACCAGTTCCCCCACCAAACCTGTTTGTCCAGATGAATCCAGTTCAGCTAACTCTGGACGTCACAACATGTATCTGGTTTAACAGGTTTATGACTACAATTCTTGGAGGAGGGGAGACACCAGACTGTATGAAGCAGCAGCCGACAACCCAGCCTCGTCATGTGGATATCCGCTTTGAAGCCTTGATGCCAAGGATTATATTGCCATGCCCGTCCGACCCTTGCTCTCTGTACCGTGAGCTCAGACCACAAGCCTTACAGATACAGATGTCTCAAGTGTTCTTCACTAACAGTCGCATTGGAGCGAATTCTTCGCAAACCGAACTCCTCATGATTCTACAGAAGTTTTCGGCATCTAAGCTGTACTCTGACTACGGCAGCTTCCCAAACGATATGGACGACGTGCGACCGCTGCCCAACCTGGCGTGGCTCAAGGACTCAGGCGTAGTAGATGACCCAGTGAAGATAGCGCGTCTTCTGAAAGGGATGCAGACCGACTCGCACCACGCGGACCACTGCCGGTCTTCCCAGGTATGGTGCATGTCGGCGGACCAAGTTTGGGCTGACTTCCTCGGCATCGCTTCCTACAAGGATAGGCCAATGCCTTTTATAGACGCTATGCCCGTAAGACTATGGATATGTACCCCGTTACCTGGCAGCCCAACAGGCGATGTGACGTCACGGACTAACGGGCCAATCCCGGCCCAGCAAGCCAATCGCCAGCCTCTTAATGCTTCGGGGACGAAGCAAATGAGTGTAGCAACTAGGACGAGCTCTTTTCCCCTCGCTCACGAGCTGGATCCTGGGAAACGGCGCCAGTTGTCAGAGCCTCATTCAGCGGCTTCCTCACCTGGCTGCAAGCGCGCGCATGATCCTCTGACAACCCCCCACTTCATATGGTCCAACTCGAGTCCGAATCTCAAGCGAGAGTTGGCTCAGAGAAAGGGTACATCTGTTGACATTGACCCTTTAGGGGCCGTTGTTAATGGTGAAAGCCACTCCTTGCCGTCCTCGCCGAGGTCTCATCCTGAAGATGTTGGCCTCACAAGGCTTGGAAGCTCGGAATCTGTGCCAAGTGTTAAGTCAGACCCAGCAGATAGCATATCTCTGAGCTCCCAAGCGTCTAGCAGCCAGGAAGACTACATTTTCATCCAGAACTCTGACAATACAATTGATTCTCGGGAAGAGTTGTCGCTCTGTGCAAACAAGCCCGAACAGGACTTTGCTAATCAGAACGGTCAGCTTTGCGAGGCGCTGACTCCAGTCGATGACTCACCACTGACTCCTACTCAAGGGGGGTTCATTGGCGGGGTCCTGATCGAAGATGCAGGTGTACTGCCTCCGAATGACCAGCCCAGATACTTCACGGATCAGACCCCAGGTGACCCAATGGGGCCGTCCATATATGACGAAGAGAGTCTAAGCGATGACCCGTCCGAGGCGGTTAAGATGGCAGATATGAGCGTGCTAGCGTACATTCCAACAAATGTAGTCATTCAACTTGAACATTTCCATCTCATTTTTCTATTTCGTCTCCAGGAAATGCTAGAAAAACTCAAGGAACAGCTCTTGTACGAATGTCAGAAAAACAGCTCGCCTACTGATACTAACGACGCTCCCGAAACAAGCCTCACGTTTTCCCTGCTCACGAAGAGCGCACGTTTAAACCTCATTCTCCCTCCTTGTCCGGACTCGGGGATTAATGGGCCTTCCAGGGCAGATAGCAGTTTGAGTAGTTATCTTGACCCTGGGTTTGTATCCGATGGAGGGTCTATAACACCTGAAATAAACCAAGATCTTGAGAATAACACCATGTCGCCAGATGGTGTCGTGATTCCTGGAAAACTCGAAAGTGCAGCTGTAAAGGTATCACCAGAAGATGGCCAGGAAGTGGTGGGCGAAGATGCCGGCCCGGAGGCCTCTGGCGGCAGGACTTCACGCGGGCGTAGGGACAGTGACGTAAGCAGTGCAAGTAGTCAGTTAGGAACAAGCGTTGAATCAAGTGCGAAGAGCAGCGCCCGCAGTGCTAGGTCTGGTCGAATCGTGTCGATTTTCAGCGCAGAGGGCGGGGATATTCAATTGGGGATTCATTTAGATGGTGAAGATATGGCCGTAAAACTCATCGCACAAGAGCTGAAAATCGACGAACGGGGAAACGCGAACATAGAGAAGTTTCTGAATCAAAAGTCCACCAAGTCACCCGCCAGAGAAAACTCAATCCCGACTCACCACTCCCTATTAGGTCATCCCGTGCTTGCCCTAAGGGCGGAGTTCGGGCCTGCGGCTGAGCGTTTCGCCCAGTCCGCTGGTGAGCGCGGCTTTGCGCATGTGCAAGCAGGGAACATCAACACTTCATTCTTGATGAGCAACCTTGAGAGTTTAAGCGACTGCTTTGACGACGAGGTTCTCACACCTAAAATGCCTCTGTATGTTGAGCTGAAGAACTCATGCGTTAGTCTACGTGACGATAAGCCACCGCGACTTCTGTCCGCCCTACCGCCTCTTCCAATAAACGTCAACATCGAGAACTTGACAATCTTCAGGAATCACGAGGGCATCGTCAACTTGAGAGGACTGAGTACTAGTTCGGCAGACATTCGTGAATCTTCCGGCCCCGTCACGGGTTTCCGGGGCAACTCTCCGAAGCCGTCGTCCCGACAGTTATCCCGCACTGCCAGCGAGTCCAGTATCGCCGAGTCTGTGTCCTCTCGGTCTGATGTTGATAGTGAGCGTGAGAGTGTCAAGGCGCAGTTGTCTGTGTCGCGCGCTGCGTTACATGCAGTACAAGAGGAGAGGCAGGCTTTGCTGAAGACAATAGAGAGGCTGCAGATGGAACTCACGTTGTCCAATCGCGAGACAGACCGACTCCACACCAGATTGCAGGCTTATGAGAGCGGTAGGGGTGGACCTAGAAATAAGTCGCTGAGGTGA

Transcript

rna-XM_032384841.2

CCTGATCattcacgcatgcgcacttgCATCTCATTAACAACGGGTTCACGGTAGAAAAATGGCGATCCTTCCCTTGTGTAGATTCAAAGGCAATTCTCGTATTTCATAGGAGTTTACAATGTCTGGTTTGGTGAAGAACCAGATCGCGAAACAGCTTGCAAGGTTTACGAAGAACCTATCGCCCAACAAGATTAGCGTCAAGTTCCTCAAGGGCGAAGGCGAGCTTCACAACCTTGAGTTAGACGAGAAGATTCTCTCCGACTTGTTAGAATTACCCCCGTGGCTTCGCATCACCAAAGCCGATTGTAATAAAATTTCAGCAAAGATACATTGGACTAAACTCAAAACAGATCCTATATGCCTGTTCTTAGACTGCGTGCAGATAGATATAGAGCAAGTTGTTGTTGCTGAATCAAAGCATTCTCCAAACCAGTCATCAACTCAACAACCACCTCAGCCAAACAAAGAGAAGGCCACTAACCAATATGGCTTTGTTGAGAAAGTTGTGGATGGCATGTACGTCCAAATCAACTCAGTCTTGGTCTCATTCAAAGCCCCAGAGTTCTCAGCAAACTTTCAGATGTCCAGGCTTATAGTCCAGAGCACAACACCAGACTGGAAGCCAGATGATCTCAGAAATACTCGCCTAAAGGATGAGACTAAAGGGGAGGTGCTCACATTCAAAGAAATTACTTGGTCTACACTTAGAATTGATGCTTTCGCCCGAGAACAGGACAACAGCAATACAAATTCAGCTCCCATTCGGTTAATAACCAGTCAATCATCACTTCACATCACCATCAAGAAACGTATTGAGGATTGTTCGGTGTTGTCAGCTTGCTTGAAGCTTCTATTGGATGATATCTTATGGGTGTTGACACAGACACAGCTACAAGCACTGATGAAATTCATGAACTCTGTGAATAAAACCATCGAAGAAAACAGGAGGACTCAAATAGAACCGGCATCTAGTACCACACCCACAAGCCAAGCCTCTCAACAGCACACACATGCTCAATACTCGTCATCCAATCTGCAAAATGGACCTGATAAAAAAGAGAGTACTACACCTTTCTCAAAACATGATTTACTTGAAACTTCTTACCACCTTAGAACTGGAAGAATTGATCTTCATCTAAGTGACGACTCTTCAGAAGTTACACCATCTGATCCCTTGTCCGGAGGGGCCATGCAAATACGGATTAACAAACTAGCAACAGACTATTACCCATACCATTTAGCGGGCACATCAAGGACTAGCTGGGAGTGCCATAATGAGGCATCTCTCTCCCGTGCCTATTGGGTCAATCAGTTGTTAAATACATTTAGAAATAATATTAGGAACAGGAAAGACTCCATGCCTCCAAGACCACCCAAGCCAAGTACTAATGGACAAGCATCTGTAGATGGTCAACTCAAGCCACCAAGTTCCCCATCCCCTCGAAGACAAACTGGCCCACCCAGTCCTAAACCATCCCGTCAACCGCCGCCCTCGAGTCCACAGCGCATTGCACCCACCCCAGGTCATAGGAGACCTGTGTTCATGTATGAAACATGCATGTTGATTCGTTGTGATGAGTTTGCTGTAATGCCAGTGACTACATATAACCAGCACAATGAGGGAAATCCATTCCTGTCATCAGACAAGAAGGCTTTGTACCTCCCCACTGATATGCCTGCATTCCAGATAGACTACACCCAGTATTACTACCCAGGAGAGATCACCTCACCAGTTCCCCCACCAAACCTGTTTGTCCAGATGAATCCAGTTCAGCTAACTCTGGACGTCACAACATGTATCTGGTTTAACAGGTTTATGACTACAATTCTTGGAGGAGGGGAGACACCAGACTGTATGAAGCAGCAGCCGACAACCCAGCCTCGTCATGTGGATATCCGCTTTGAAGCCTTGATGCCAAGGATTATATTGCCATGCCCGTCCGACCCTTGCTCTCTGTACCGTGAGCTCAGACCACAAGCCTTACAGATACAGATGTCTCAAGTGTTCTTCACTAACAGTCGCATTGGAGCGAATTCTTCGCAAACCGAACTCCTCATGATTCTACAGAAGTTTTCGGCATCTAAGCTGTACTCTGACTACGGCAGCTTCCCAAACGATATGGACGACGTGCGACCGCTGCCCAACCTGGCGTGGCTCAAGGACTCAGGCGTAGTAGATGACCCAGTGAAGATAGCGCGTCTTCTGAAAGGGATGCAGACCGACTCGCACCACGCGGACCACTGCCGGTCTTCCCAGGTATGGTGCATGTCGGCGGACCAAGTTTGGGCTGACTTCCTCGGCATCGCTTCCTACAAGGATAGGCCAATGCCTTTTATAGACGCTATGCCCGTAAGACTATGGATATGTACCCCGTTACCTGGCAGCCCAACAGGCGATGTGACGTCACGGACTAACGGGCCAATCCCGGCCCAGCAAGCCAATCGCCAGCCTCTTAATGCTTCGGGGACGAAGCAAATGAGTGTAGCAACTAGGACGAGCTCTTTTCCCCTCGCTCACGAGCTGGATCCTGGGAAACGGCGCCAGTTGTCAGAGCCTCATTCAGCGGCTTCCTCACCTGGCTGCAAGCGCGCGCATGATCCTCTGACAACCCCCCACTTCATATGGTCCAACTCGAGTCCGAATCTCAAGCGAGAGTTGGCTCAGAGAAAGGGTACATCTGTTGACATTGACCCTTTAGGGGCCGTTGTTAATGGTGAAAGCCACTCCTTGCCGTCCTCGCCGAGGTCTCATCCTGAAGATGTTGGCCTCACAAGGCTTGGAAGCTCGGAATCTGTGCCAAGTGTTAAGTCAGACCCAGCAGATAGCATATCTCTGAGCTCCCAAGCGTCTAGCAGCCAGGAAGACTACATTTTCATCCAGAACTCTGACAATACAATTGATTCTCGGGAAGAGTTGTCGCTCTGTGCAAACAAGCCCGAACAGGACTTTGCTAATCAGAACGGTCAGCTTTGCGAGGCGCTGACTCCAGTCGATGACTCACCACTGACTCCTACTCAAGGGGGGTTCATTGGCGGGGTCCTGATCGAAGATGCAGGTGTACTGCCTCCGAATGACCAGCCCAGATACTTCACGGATCAGACCCCAGGTGACCCAATGGGGCCGTCCATATATGACGAAGAGAGTCTAAGCGATGACCCGTCCGAGGCGGTTAAGATGGCAGATATGAGCGTGCTAGCGTACATTCCAACAAATGTAGTCATTCAACTTGAACATTTCCATCTCATTTTTCTATTTCGTCTCCAGGAAATGCTAGAAAAACTCAAGGAACAGCTCTTGTACGAATGTCAGAAAAACAGCTCGCCTACTGATACTAACGACGCTCCCGAAACAAGCCTCACGTTTTCCCTGCTCACGAAGAGCGCACGTTTAAACCTCATTCTCCCTCCTTGTCCGGACTCGGGGATTAATGGGCCTTCCAGGGCAGATAGCAGTTTGAGTAGTTATCTTGACCCTGGGTTTGTATCCGATGGAGGGTCTATAACACCTGAAATAAACCAAGATCTTGAGAATAACACCATGTCGCCAGATGGTGTCGTGATTCCTGGAAAACTCGAAAGTGCAGCTGTAAAGGTATCACCAGAAGATGGCCAGGAAGTGGTGGGCGAAGATGCCGGCCCGGAGGCCTCTGGCGGCAGGACTTCACGCGGGCGTAGGGACAGTGACGTAAGCAGTGCAAGTAGTCAGTTAGGAACAAGCGTTGAATCAAGTGCGAAGAGCAGCGCCCGCAGTGCTAGGTCTGGTCGAATCGTGTCGATTTTCAGCGCAGAGGGCGGGGATATTCAATTGGGGATTCATTTAGATGGTGAAGATATGGCCGTAAAACTCATCGCACAAGAGCTGAAAATCGACGAACGGGGAAACGCGAACATAGAGAAGTTTCTGAATCAAAAGTCCACCAAGTCACCCGCCAGAGAAAACTCAATCCCGactcaccactccctattaGGTCATCCCGTGCTTGCCCTAAGGGCGGAGTTCGGGCCTGCGGCTGAGCGTTTCGCCCAGTCCGCTGGTGAGCGCGGCTTTGCGCATGTGCAAGCAGGGAACATCAACACTTCATTCTTGATGAGCAACCTTGAGAGTTTAAGCGACTGCTTTGACGACGAGGTTCTCACACCTAAAATGCCTCTGTATGTTGAGCTGAAGAACTCATGCGTTAGTCTACGTGACGATAAGCCACCGCGACTTCTGTCCGCCCTACCGCCTCTTCCAATAAACGTCAACATCGAGAACTTGACAATCTTCAGGAATCACGAGGGCATCGTCAACTTGAGAGGACTGAGTACTAGTTCGGCAGACATTCGTGAATCTTCCGGCCCCGTCACGGGTTTCCGGGGCAACTCTCCGAAGCCGTCGTCCCGACAGTTATCCCGCACTGCCAGCGAGTCCAGTATCGCCGAGTCTGTGTCCTCTCGGTCTGATGTTGATAGTGAGCGTGAGAGTGTCAAGGCGCAGTTGTCTGTGTCGCGCGCTGCGTTACATGCAGTACAAGAGGAGAGGCAGGCTTTGCTGAAGACAATAGAGAGGCTGCAGATGGAACTCACGTTGTCCAATCGCGAGACAGACCGACTCCACACCAGATTGCAGGCTTATGAGAGCGGTAGGGGTGGACCTAGAAATAAGTCGCTGAGGTGATCATGATGTTCATTAGTGGTCTGGCTTCATTTAAACAGCATACTATACATGAAATGAGGAACCCTTTAACCCAATATGTTCAGTGAAACATGTAGAATGGCTTTTGTGCCCAGGACAGTGATTTTACACTCCTTCACCCAAATTTCAAAGAAATGATATCCCAATACCTTACCTCTTGAAAGCCAACACCCAAAAAACTATTCATGCCatttgcgatttttttttatttggtcaATCATAATGGAATTAACTAAGCCAAACTTTGACGATAGATTCGTTAGTTGTGTCTCGTATTTAGAATAGCCTGCGTAACGGCCATTCCCTTGAGCCGCTTCGCAGGCTATGTAGTTTAGAATACCATTTTTAAGGTCGCCAATTGGGAAAACAGTCAATTTTGAGGGTTACGTTTGTAAAGAGAAAAACTGTAACAACACAGTCCTTGGCTTTTGTTAACTTTAAGTTTATTCTGTTTAGTAGagcagatgtttttttgttgttgttgttgttgttattgttgttcaGGCATACAGTCGGCCTCATAAAAGCGTTGTCCATAAAGGAAGTTATTTTACTACTTTAATTTTCAATGTGTTAATGCAAGACTTTAGTCACGTGTATGTCTGTGAAACAATTCCTTATGCAtgttaattaataattaaatagTTGAAAATGAGACAAGTGACTTTTTCAGAACTTTGTAAAtttgtttatatatataaaaaggCTTAATGAGACAGGCTGTATGTCAACACTTGAACaatttctcttaggtagctcgtccAAGCTTGCAATCATACACAATATTCCTTCATTAGAGATGACCTTCCCATGTAGTGGGGTGTCATGAGGCCCCCTGCCTGTGGCCCCGATAACATACCAAGAGTCCCCTGTTAGAgtcattattttcattacgCTCTCTATACAATTTTTCGATAAAGATTCTTAGAATATTTGATTGCATGGTGCAGAATGCTGTATAAAGAaaagtcaaatattttaaatagaCTGTCATGTGACCCAAAGAAATAAGTTATCACGGATCACAGGAGTATGGTATCATTTTTACATAGTTTAATGAAATACAGAGGGTacagcaatattttatttaaaggtGGTCATTTTTGTATTAAAGAAGATTCTAGTTtgtgaataaaatattaaGCTTAGGAATTACTGTTCAATTGGGATAACAAAATAGTTTGTAAAAATTTATAAGAGAATTAAAGTCAGGTTATTGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRZ1	Bridge-like lipid transfer protein family member 3B OS=Xenopus laevis OX=8355 GN=bltp3b PE=2 SV=1
A0JNW5	Bridge-like lipid transfer protein family member 3B OS=Homo sapiens OX=9606 GN=BLTP3B PE=1 SV=2
A2RSJ4	Bridge-like lipid transfer protein family member 3B OS=Mus musculus OX=10090 GN=Bltp3b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005606 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12624 all species →	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026854 all species →	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan
IPR026728 all species →	Family	Bridge-like lipid transfer protein family member 3A/B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22774 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032240732.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032240732.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240732.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

12.0Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.26	11.98
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.83	10.51
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	5.88	6.30
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	5.08	6.07
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.67	6.67
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	3.74	6.00
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	9.30	10.68
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.47	8.76
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.47	7.64
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	7.55	8.43
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	6.14	6.41
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	7.25	8.79
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	6.96	7.67
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	5.00	8.61
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	6.58	7.45
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	5.23	8.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.98
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.93
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.86
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.51
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.86
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.11
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.30
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.71
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.63
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.07
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.95
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.22
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.67
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.73
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.60
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.00
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.22
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.68
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.92
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.32
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.76
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.08
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.57
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.64
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.76
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.43
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.76
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.47
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.41
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.39
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.63
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.79
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.62
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.34
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.67
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.64
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.58
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.61
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.39
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.45
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.42
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.88
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.65
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.03
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.