Gene detail

Detailed information of XP_032240735.2 in Nematostella vectensis

Genomic Location: NC_064039.1:15065198...15073864
NR annotation: XP_032240735.2, choline/ethanolamine kinase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384844.2

ATGGCGGCTAGTCCTTCTTCTTCTAAAAGTAAAGTCTTTTCTTTGGAAGAACGTAAGATCCAGGCCCATAAACTTTGTGGTGAATATCTTGGAGGAAGCTGGAGTGAAGTGTCTCTGAATGAATTTGGTTTTAAAGTGCTCACTGGTGGCCTCTCCAATGAGATTTTCATCTGTAACCTTCCAGAACACTTCGCTGAGAATAAACAAGAAGTTCGCAAAGTTCTGTTTAGAATATATGGAAGATTGGTTGGAAAACTAATAAGTAACATCCATTCTTTAGTAGCAGAGAATGTTGTGTTTGCTCTCCTTGCTGAGAAAAAGATTGCACCTAAACTTTATGCTATTTTTCCCGAAGGACGGCTTGAAGAATTTTTACAAGCAAAATCTTTAACTGTAGCTGAGATAAGATCTGCAGAAAATTCTGTTAAGATTGCAAGAAAGTTGAGGGAATTTCATGGTCTGAGTTTACCACTGGGGAAAAATCCTAAGTGGTTTTGGGAAAGATGTGAAAGCCTTATGAGAGATGctgaaatattttcaaatgaaaatagTGAGGATGCTTTGAGGCTGAAGAAATTCTTTAAAACCTTTGATGCAGATAATGAGTACAAGATTATGAGAAATATAGCAGAGTCTAAAGCAGGACCCATCCTCTTTTGCCACCAAGACATCCAGGAAGGTAATATTCTGTCTGTGCCAAGAGACGTGGATAATGAGGGACAGCAGCAGTATGACTTGCTATTTATTGACTATGAGTACTGTGGGTACAACTACAGAGGCTTTGATCTCGCTAACCATTTTAATGAATGGATGTGGGACTACAAACACGAAGAGGCGCCCTACTACTTGTATAATCCCGAGCTATTTCCCTCTTTAGAACAGCAGTTGCTATTCATAAGAACGTATCTAGGAGAGCAGACGAATTGCCACAGCCAGGATAAGATATCGCCTAAAGAACAAGAGTTACTTGATGAAGTACAAAGATTTGCTTTGGTATCGAACTTTTTCTGGGGCATGTGGTCAGTAGTTCAAGCAAAGATGTCGAACATTGAATTTGGATATCTTGAATACGCTTTCACAAGATTCGACTCATACAgaagacaaaagaaaaaacttgGTTTGGAATAATTAATACTTCGAATTATATAGATAATCCGACTTGATTAGGCAGGTATTCCAAGGGAAAAAAGCACACATACTTCCCCACATGGAGAAAATTGAAAATCCTGGTGTTGGGGATGGGGAAAGTTATGGTCTTATTTCCAGGGGTTGGGAATCCCCTTAACCAGAGTTTCCGGGAGAGTGACTATCCGAGAAATACATATTTATCACAGTATTTAAACCATATTATAATTTTGTTTAACCCTGACACACGAAAAACAATTCAGTTATCAATTCAGTGTACCCATGTGTTCATCATAATCGTACACAATCTTTTAGCAGATTGAACCTTTTTTAAGGGGATAGaaatatttacaaatatttaaaaagaacatCGGTTCTGGAGCCGACTTTTGTCAAGGATCTTTTAGTACCGCAAAAACTCATGCACGTAAGGCGTACTCTTCAATAACGAACTACATCCTGTTAAACCATTGTGAAATTCTACAATATGTTTCCATTTCATTGCTAAATTGTAAAATAGTCCATGGATAATTATGTTTCTCAATACGATAAGATATTTCAATTTTCAGGATGTAGCCAACAGTGACACACTGAATCACGCACAAGTCTGTTCCAGAATCTTTAGAATACCATTTATATCAAGTATAGTAGCACATACCGGGCCACAGGTATCTTAAGTATAAAGGACAAAGAAAAGACCAGGgacggatctagcttttcgctgaaGGGAGGGGGTATCAGTGACAAACTGAATCACGTACAAGTCTGTTCCAGAATCTTTAGAATACCATTTATATCAAGTATAGTAGCACATACCGGGCCACAGGCATCTTAAGTATAAAGGACAAAGAAAAGACCAGGgacggatctagcttttcgctgaaGGGAGGGGCTCTCAATGACAAAGGGTGGGGattatttttttggcttttaaCATTTGGCTTTAAAAAGAGCATGTGCACTAATCAGGGTTTTTCTAAAACAAGaaatactttttcaacttaaTGCTACTCTAACTTCACCATTTATTGGTCatgttgttaaaaaaaatcgcaGCAAAATAGATGTGTAGGGGTGTGCAATTTAGAAGAACACTCACCATCTATTTAACATAACTATTTCCTTTAGCAGCGTAAAGGGGGGcataaaccctccccctataaCCGCTACTGAAGACTATAATAAACAGGAAAATGGCGCAAAGGGCCATGGTCCAAGAGAAgggtcaccccccccccttcttacTATTACCCAAGCTTCTCTGCGCGCTTCTCATGGTCTCGCTGTTCTTCGCTATAAAGCGCATTGGCAGTAGTAGCAGATGGTAAATTTGTATAACCGAGTTTTTATATGCATGAGTTACTGACACATAATACATAGTCATGGTACATTATATATGGATTTGTGGGAACTAAGTAGGGGGTTCTGGTTCTAAAGGATTTTAATTAAATACCATTTAATAGATGATAAATACGTTTTGCGAGGATGTCTTTAATACACACTATTTACCGGCAATTGTAGTCGTGATAGGCTATATGTAAACTTgtgaaaacaaattttatagtaagaaaataaCGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y259	Choline/ethanolamine kinase OS=Homo sapiens OX=9606 GN=CHKB PE=1 SV=3
O54783	Choline/ethanolamine kinase OS=Rattus norvegicus OX=10116 GN=Chkb PE=1 SV=3
P35790	Choline kinase alpha OS=Homo sapiens OX=9606 GN=CHKA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01633 all species →	Choline_kinase	Choline/ethanolamine kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22603 all species →	CHOLINE/ETHANOALAMINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004103 all species →	Molecular Function	choline kinase activity	Interproscan
GO:0004305 all species →	Molecular Function	ethanolamine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006646 all species →	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan
GO:0006656 all species →	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0006657 all species →	Biological Process	CDP-choline pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14156	CHK; choline/ethanolamine kinase	EC:2.7.1.32 EC:2.7.1.82	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240735.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

17.2Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.27	17.18
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.37	7.18
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.03	3.72
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	4.42	4.63
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.28	6.12
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.62	4.86
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.30	6.69
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.36	6.51
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.33	5.39
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.66	4.09
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.49	4.99
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	4.49	7.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	4.49	6.75
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.00	6.01
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	4.00	6.55
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.65	4.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.18
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.20
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.42
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.18
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.65
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.27
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.72
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.92
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.45
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.63
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.47
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.15
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.12
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.51
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.21
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.86
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.69
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.23
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.51
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.13
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.45
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.39
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.60
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.09
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.89
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.99
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.32
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.15
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.86
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.61
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.75
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.72
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.01
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.55
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.96
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.