Gene detail

Detailed information of XP_032240741.2 in Nematostella vectensis

Genomic Location: NC_064039.1:14555458...14567482
NR annotation: XP_032240741.2, cytosolic non-specific dipeptidase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032384850.2

ATGGCGTCGAACAACCAACATGAAGAGGCCCTGTATTCTAAGCGGGACGCCCCGATAATATTACTTCAAAGTGAGGCTATATATGACCAGGCCTCTCATATATACACAGGCAAACCGCGTCTCTCGCACAGCTTCTTTTGCATTGCTAGGAGCAGAGTCATGTCTTCCCCGGTTTTGCAGAAAGTTTTTGAGCACATTGAGAAAAATGAGGAACTGTATATCAAGCGTCTGGCTGATGCAGTCGCCATCAAGAGTGTGTCAGCATGGCCAGAAACAAGAGGAGAAATCACAAAGATGGTCAACCATGTTGCAGAGGAATTAAAAAAGCTTGGTACAGAGGTTGAACTTGTTGATGTTGGAACTGAAACCCTCCCTGATGGTTCCACTTTACCACTTCCACCAGTTCTGCTTGGAATCTTGGGTAGCAACCCAGCTAAGAAGACAGTCTGCATTTATGGTCATCTAGATGTACAACCTGCTCTCAAGGAAGATGGCTGGGACACAGAACCATTTACACTGCAAGAAATTGATGGCAAACTTTATGGGCGTGGCTCAACAGATGACAAGGGTCCTGTTCTTTGCTGGCTGCATGTAATAGAGGCTTATAAGGCAATTGGGGAAGATCTACCTATCAATATCAGATTCTGTCTTGAGGGAATGGAGGAGTCAGGCAGCGAGGGACTAGATGACATGATTTCCAAGAAAAAAGACACCTTCTTCAAGCCGGTTGACTATGTATGCATATCTGATAACTACTGGCTTGGAAAAGAGAAGCCATGTATTACTTATGGACTCCGTGGCATCTGCTATTTCTTTATCGAAGTGTCATGTGCCGACAAGGATCTCCACTCTGGCGTGTTTGGTGGTTCTGTGCATGAAGCCATGACTGATGTTATCGCCATGCTGAACTCCCTTGTGGATGTGAAAGGCAACATTCTAGTGCCAGGAGTGAACGATCGGGTAGCGGACCTTACCGATGACGAGAAGGCACTTTATGACCCGATTGATTTTAATATGGACGAGTATCGTGAAGACATCGGTACTTCCAAGCTCATGCACGAAACCAAGGAAGAGCTCCTAATGCACCGTTGGCGCTATCCTTCTCTCTCCATTCACGGTATCGAAGGTGCTTTCTATGAGCCTGGGGCTAAGACTGTTATCCCGCGCAAGGTGATTGGCAAGTTCTCCATCCGATTGGTGCCCAATCAGATACCAGATGAGATTATAAATCACGTGATCACTTATCTAAACAAGGTTCACGCTGACCGCGGGAGCCCGAACCCTGTCAAAGTTTCGTGTGGGCATGGCGGCAAGCCGTGGATGAGCGACTTTGACCACCCGCATTATCAGGCGGGACGAAACGCAATGAAGACAGTGTTCGGTGTCGACCCTGACCTGACCCGTGAAGGCGGAAGTATACCGGTCACCCTGTCTCTACAGGAAGCCACTGGCAAGAATGTGATGTTACTGCCCGTGGGCGCATGTGACGATGGCGCGCATTCGCAGAACGAGAAGATTAACCGCTCTAACTACATCAACGGGcATAAAGTCGTTGCAGCGTACTTTGAGGAGGTTGCCAAACTGGGATAAAACACTCATCAGCAATAAACCATCAAAGCACTACAAGAAAATTCAAAATACAGTAGTTTATATGATAGGGAAATATAGATTAAATAAATTGTTATAAAGAATTGGGATGACTTTATCTTTTATAGGCTATGCTAATTGAATAGGATGATAAAGTAATTCGTGTTATTTGTTTGTGATTTTTCGTAATTATTACTTCCTGTTCCATTGTGGCCCACGCTTACGTAACTATAGTAAGATTTTAGTCTCCTAAATTATATCTGCTGTGATTTTAATGAATGTCTGTTATATGTCATATACCAGAATCCTTCTCACAAACTGTATTTATGAATAAAATATGTCTTGATTCGTCTCCGCTACCAATCAAACGCTGGTATTAGTGCCATAGTGACAAATTTATTGCTGCCTttataaatgaaaattacaCCTATTTAGGGCGAGTTCTTTTTACAATAAGATATAAATCCACGCGGTTCGCTAAATGTATGTGACATTTTAGCTATCCGAAACAGTAAATTTGTCAAATGTTTTAGTAATTCCATGAGCGTTATAAAAGATTGACAGTTACAACCAGTCTCGCGCTGCATGACGTTTCTTTTATGTTGCCACAAGATTTGCATTCAGCTAAAGCAGTCCACAACGAAACGACACCATCAACTTCAGAGCGAGCACTTCTACGCTTAATGGACAcctataaacaaaaatatgctgcTAAACGATCCTTAAAGTAAGTGGGCTGAATAAAAACAACCCGTAAACCCGTATAATCAAACTCTCCTCTAGGCTATTCAACGTCTGCTTGTCTCGACAGCGTTTTTACATAGATAAGACTCTTCGAGAGAAGTATTGGAGAATTTCAAAGGAGAAGAATTGAAAACTTGGCGTTGGAATATGGGCCTGTTGGCAGATTGGCTTCGACAGTAAAACAGGTAACGCTAGCCACGTGTTTCAAGTGAGGCGCCGAACAATAGCATCGAAAATGTTTCATTTACTGTTCGTGTCGTATTTATAATTAGAAACACGAGTCTAGAAAACTTATACGAGAAAAAAAGTTAGGCGAGTGAGGCTTGTGGTTTCTCGTCTGTTTTCTCTTCTCGTCATTTCCATAGCAAGGTTTGTCTCCCGAATCAGCACGAAAACAATATCAACGtcaacaaagaaacaaaatcgCCACACGAGAATTGAATTATTCCCCaggaaagt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D1A2	Cytosolic non-specific dipeptidase OS=Mus musculus OX=10090 GN=Cndp2 PE=1 SV=1
Q6Q0N1	Cytosolic non-specific dipeptidase OS=Rattus norvegicus OX=10116 GN=Cndp2 PE=1 SV=1
Q96KP4	Cytosolic non-specific dipeptidase OS=Homo sapiens OX=9606 GN=CNDP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002170 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07687 all species →	M20_dimer	Peptidase dimerisation domain	Domain	Interproscan
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017153 all species →	Family	Cytosolic nonspecific dipeptidase/DUG1	Interproscan
IPR011650 all species →	Domain	Peptidase M20, dimerisation domain	Interproscan
IPR002933 all species →	Family	Peptidase M20	Interproscan
IPR051458 all species →	Family	Cytosolic and Metallo Dipeptidase	Interproscan
IPR001261 all species →	Conserved_site	ArgE/DapE/ACY1/CPG2/YscS, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43270 all species →	BETA-ALA-HIS DIPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070573 all species →	Molecular Function	metallodipeptidase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08660	CNDP2; cytosolic nonspecific dipeptidase	EC:3.4.13.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240741.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

46TPM > 0

16Conditions

59.4Max TPM

31.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	36.25	38.95
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	34.36	43.10
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	27.81	30.13
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	29.10	29.88
whole 6 week old aboral regenerate · regenerate uncut	3	3	26.42	28.61
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	23.19	26.23
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	46.52	59.42
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	37.50	41.73
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	28.32	31.01
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	31.04	32.53
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	29.40	31.91
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	34.45	38.66
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	37.62	40.12
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	42.59	53.22
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	31.25	36.31
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	10.23	30.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	38.95
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	37.61
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	32.20
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	43.10
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	30.37
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	29.62
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	30.13
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	26.67
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	26.63
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	29.88
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	28.84
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	28.56
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	28.61
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.48
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.16
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	26.23
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	26.20
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.14
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	59.42
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	43.62
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	36.50
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	41.73
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	40.46
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	30.29
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	31.01
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	27.82
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	26.12
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	32.53
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	30.33
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	30.26
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	31.91
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	28.84
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	27.47
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	38.66
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	33.49
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	31.19
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	40.12
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	38.89
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	33.85
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	53.22
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	40.45
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	34.10
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	36.31
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	28.98
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	28.47
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	30.69
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.