Gene detail

Detailed information of XP_032240902.2 in Nematostella vectensis

Genomic Location: NC_064041.1:11733021...11745398
NR annotation: XP_032240902.2, mitoguardin 2 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385011.2

TGTACCATCGCGTGGTCGCGAATTCTCCTCCAGTCAAACCAAAACATGGTGCAACCGCCTCGCAGAAAATGCACGATATATCTCGACTTTAAAGTTTGCAGTTTAGTAATGCAACAAACACCATGAAagcttaatatttttttcaaattaggCGTATTTTTATGAGGATTGAGGGTGATGTTTGGGGGCAGGCGGACTATAATTTTTGTGCTTTTGTCGCTCGGAGCAAGCACATTGCTTTGGGTGAGCGCGGCTTATTTCCGAAGAAAACGAAGACAGCGACTTTCACTAAATTCCTCCAAAGATGATGGACAAGGAAACAAAATTTCCGGTCGAGGGTCAAAATCTCGCTCAGCTAACTTGGATGCCATCGAAAGGTTACGTGCCGGGAGTGCTCTTACTCGTGCATCTTGTCTTGAAAGTTCAAAATTTGCCACAGATGACGGTAAGCTGTCTGAGGATAGTGGTGCAGTGGATCTGCAGTGTTCCAGTGAGGATGAACAGCTTATTCAGCATCTCATCACAAAAGGAGTAAAGGATTTTGAAGCAGCTGTAGAGCACTGGAACACGGCGGCAGACCACATTATACAGCAGCAGCAAGCATCCACAATAGTCGACGGAGAAATCCAAATTCATGAGAAAACACATCAGGAAATTACCCTTAGTACACTGCTCAGTAACGCCCAGCGGCTGCGTATGGCTATTGTTCTACAAGGCTTGGCCCCTAATGAGGCCTTTGCCATCACACCCCAGCGAGTCATGGGATGGGTAGAGGAGGAGACGTTCCAGGCTGAAGAGGGGAACCCTGATGCCGACTCCGATGCTGATTCATTTGTTTCTGCATCAGAATCTGCTGCCCTTGAGTATGATGACCTTATTGATGACAAGTTTATTCGAGAATCAGAACAGTTAAGGATGTTCAGACAAACCATAATCAAAGCTGCAGGCAGCCACAGCCACTTGGAGTTGTATGTGACAGGGCTGGAGCACTATGCAAGGTGTGACGTTGAGTGCAGGAAAATGAGGACTGCTGAAGTGGGTTGTGATAGTGACATGGAGTTTCTTGCCAAGGTCTATTGCCTGAGACAAGCATCTGAGCTTGCCTTTTCCTCAAGAGACAACTGCACATGGTTTGCAAACAGTGGTCGCTTTCTTCTATCATCCATTATCAGAATAGCAGGAAAGAACCCAACAGACTTCATCGCAGCATTTGATGAGCTGCTGGAGTACTGTGCTGCACCTGAGAACTTGTCCCAAATTGAGGAAGAGCTGCAGACAAGGGGGGTGCCAATGCTGTCTTTCTATGATGTCATCCTTGACTACGTGCTGCTTGATGCGTTTGATGACTTGGCCACGCCCCCGTACTCTGTTGCCACAGCGATACAGAACCGTTGGTTATCTGCTAGTATAAAAGAAACGGCACTTACGACTGCTATCTGGGGTGTACTGAAAGCCAAGGCATCCTATCTTAAGGATCAATTCGGGTACATGGCCCACTTTTACGTCGTCTCGCAGTACATCCTTCCCGTACTAGCATGGGGGTTCCTCGGACCTGATAACGAGCTGAGAGGACTCTGTGAATACTTCAAGGGTCAAATGCTTGGTTACATCCGGGACGTGTTTAGCTTCCGAACTGCAGACTACAGCTCAGTAAAAACTCTTTCCCATTCCATCATCACCCTGGCTCGGCAGCGAAGTGAAGTTTTAACAAAGCGATTGGAACTAGCTCTTCCTGAAGATCAGTTGCCTTCTGAGCTCTTCAATGTCTACTGATTAGTACTGAAAGAGGAGTTACCAAAAATGCTCGGCTACCCAGgggccgggttcctagaaagcaggttagcgctaacccagggataaatacggctatcttgacatttgattggataaaaagagCATTCATCCCTCGGCTAGCATTAGCtactttctaggaacccggcccaGGGCGCGAATTTATTTTTAGAGTTGTCGTGGGCgctaatgcctggtgcacactagttacataacgacatgggcacgcactcttatcttcgtatgtaagtgtgaatggttcgacattttgacataaacccgacataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BK03	Mitoguardin 2 OS=Mus musculus OX=10090 GN=Miga2 PE=1 SV=1
Q7L4E1	Mitoguardin 2 OS=Homo sapiens OX=9606 GN=MIGA2 PE=1 SV=1
Q1JPG0	Mitoguardin 2 OS=Bos taurus OX=9913 GN=MIGA2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004690 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10265 all species →	Miga	Mitoguardin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019392 all species →	Family	Mitoguardin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21508 all species →	MITOGUARDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008053 all species →	Biological Process	mitochondrial fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27289	MIGA, FAM73; mitoguardin	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032240902.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

16.9Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	13.62	16.86
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.92	14.16
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.68	9.84
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.60	9.77
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.79	10.30
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.42	14.81
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.61	15.23
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.08	9.80
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.24	7.61
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.07	7.69
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	6.51	7.60
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	8.57	11.60
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.26	10.69
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.11	12.34
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.20	9.67
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.05	9.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.86
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.40
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.58
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.16
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.84
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.77
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.84
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.75
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.46
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.77
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.49
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.54
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.30
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.60
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.81
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.46
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.23
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.60
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.80
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.24
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.20
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.61
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.12
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.69
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.50
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.60
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.51
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.42
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.60
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.29
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.83
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.69
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.64
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.46
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.34
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.67
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.94
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.16
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.