Gene detail

Detailed information of XP_032241035.2 in Nematostella vectensis

Genomic Location: NC_064042.1:8883604...8895839
NR annotation: XP_032241035.2, balbiani ring protein 3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385144.2

CCTCACGAAGATTTGAAGCGTGCGAAGCTTTCTGCTCACGCAATAATCGATAAGCTCCCTCTACCTCTCCCTATTCCCTCAGACGCCTGTCAGGGATACGGTCTGTCTTGTCCAGTAGACAGCGGAGTCAAGTCGATGTTCAAGATTCATCAAGCTATCGAGTCCGAGTTTCCTGTCGGTAATTTGACCTTGAAGGCGGCAGTAACAGATTCGGACACGAGTCAAGTTGTGTTCTGCTTTGAGGTGGATCTAGAGATCGCTTGATTGGCTGTACAAGGAGGGGTGCTGCGTATGCTGCCAAGATTCGAGACCAGATAAGGATTGAGGACATTATGGTCGGCTATGCGTAATGATTTTCTGTCAAATGATATGTGGTGACAGTAGGAAAATCAAGATCTAGAATGGATAAATTTGTTATTCAATTCGAGATGAAACAATGACATTAGAGTGCTATGCCTTTTTAGTCACCCTGGATAAGTTCAGTGTAAGTAACGGTGGATAGCTCCACTTAAATAATTACCTGTTAAACGTGTTGAAGcattaactaaaaaaatattgaaaaaatagtGTGACTACATAAGTGAAAATTGACtaccttatttttttagatttttttagatGTTCCCTAATATCGCAAACACGTTGATGATTACAAAAATGTTCTTGAAATGTTTACGTGTTTAGTTATTTTGTGGGATATTGTGTGCGTGTGTAATGTGAGAGGTGGGAGTGCAGGGTAACGTTATCATTAGTGAGTTTCGTCAACATGGTATCCAAGTCAGTTATCTATAATTCAACAGCTTTGATTAATAATGACTTTGCTTTCTCTGAGAGCCAAGAGAGCGTTCCAAAGAAAAATGACCGCAGAATAAATAGGGCGGGGTTAAAGGCGGAATTGAATTCATTCAAACTCCATAAACTTTTTTACGTAGCACGTTATTGCTCTCTCTTACTTATATGGGAAAAAATTAAAGTAAAAAGCGAATTATAGAATGATATGTGAAGGAACTTATTAGGCTGTAAAAGGAAAATGGAATCCATGCTTGTCTGGCGTGTTTAGAGGAAATGTGGCTACCGGGCGATAAAATTCATTCAGATGTTAACGGAAGAAAGGCCTTCGGGCACAGCAATTAATAGATGGTTATCAGCTCATCCGTTTTACTTAGGATCCACAATAGCCAAGGCAAATCATTTTATCCCGTATTCGTTTTTACCGAAATCCAATTTTCTTAATAATTTTCTTATATCCCGAAACCGAACGTCTCATAAAAACGTCTCGCAAAACTCGCAGCCATCTTGAGGACTTAGAGCTCTGAATCCTGTACACACAGGGGTACCGTACCTATCCCGTACCTATGATCATCTGCGGACGGACGAAGAGCGCAAAGCGACAATAGACTGACATAGATAGGAAAAGCTGGAAGATGATAAGGGGACAGGATGACTTAGACGTAAAAAGTAAATTACACGACGCTTTTTGTATTCTAATATGCCTATTTAAAAATGTAGCTGTGTCTCTTAGAAATATATAGTTATTTCTTAGAAATATAGTTACGTCTTTGAGAAATATAAGCGATGTCTCTTGGAAATATAGTGATGTCTCTTAGAAATATAGTTATGTCTCTTAGAAATATAGTTATGTCTTTTAGAAATATAGTTGTCTCTTAGAAATAAATCTATGTTTCTTAGAAATATATTTATGTCTTTTAGAAAGATTATTGATTTAAGTCTCGAACTCTGTGATTTGCTAGCTGGTAGCTCATCCAAATCAAGACTTTAAGGCTGGTCATATATGATCGCACTCCATCTCACATGATCGCAGGCAATTGTGTGCGTTTATATGAATTAAACTCACCATACGATCGTGTGCGATCGAGTGCGATCCTTTGCGGTCATATGGAAACCTTTAGTTGCGATCGTACAGTCAAAATAGGCACGACCATGTGTGACCAGTGAGCTTATATTAAAATCAGCCTTTAGGCTACTCCATTAACTGGATGATGGCAGAGATGGTACTTAAGAAGATGTCGATCAATttctcctttgttatttttataattgaaaatacaacggatTTTTTTAGCAAGGACATTTCAAAGTTACCATCCACGATTAAAGACGGATACTTTATTaattatatttgattgaaagatTCTCAGTTACACACTtcaataagccgatggaactAGATTCTAATATGTGACTTGGcatcgagcgggagcataaaatggcggcgtgattggccttctttattCATGTTTCTTTGCGACTTCTATCTAAATTATCAGAGACTTGGCACTTCATCGGGATTTTGGAATCCCTATTCGAACATGATCTACCGTTCACAAAAATGCGTTAAGTAATTTTaatgtaatttttaaaaatgtgcCTTTCTCATTTTCTCAATCCAAATACTttcttatttaatatttttttttgtgcgtAAGGGTATAGTCTAAACTATTTTAGCATAATTTTGTTTGTGCGTAAGGGCTAGTCTAAACTACTTAAGCCCGCAAAGGACCACATGTTGATCACATTATTGCGTAGAAGATAGAAGCTATCATCCTATGGGGGAAGGGATGGGCTTGTAGAGAAAGATAGGTAGAGAAAGAAGATTATAGAAAAGTAAGGTGGACACAAATAGAAGCCAAAACAGCGCATTTACACTCCATGACTTTAATAACTTATGATAACAAACGACATTGATATCTACAATTAAACGTATATGACATTTTGTCAAATCATCTTGATATGAATTCTAAATATTCTTATCAAAAGTGTAAAACAGGCTGAGGGCTCAGCTGTCGTAAGGCGGGTATCTTTTCAGTTTTCATTGCCAAGTAGAGCACAGGCTAACGATAGCATGCCCTACCTTAGCTGTTAGTCGCCCTTGAAGATCCATGTATTAGGGCGACCCTTTGTATAACGCGCATTGTACAAATAATTAAAGAAATAGTTCATTCTGCTTTCCCTCTGAAATTGAGGTTCAGTTTGAGCTTCCTGTCACGTGACAACCACGTGACAGGAAGCTCGACCTTTAGAAAGCGAACATACCACGTGGGGGCTTTCTCTTATCGCGAATTTAATTCCTTGTGTACCCAGCTTAATAACTTCTTATGAGTTCCTAAGGTGCAATAATTGCAAAATTGGAAATATAACCAACCAATAAAGCCACAAATTGATATCACATTTCACTCGGAAACTGGCACGCGCCATGCCTGTTATTCCCACCCAAGCATAATGACCATTTCATTGACCAAAACGATCATTATACATAGCAATTCTTATGTCAGTTAGGACTTTCATTTTGCTAAGACTAATGACTTCGTTACAGGTGAACAGGGGATCAGGTTTCTTCTGTATTCCTATATAATTATGCATGATTTATAGGCATTGTTCTTTGCCTCGCGTTAGCAGAGGACAGAAAGTGATTGTGCTCCGTTTAAAGGTTTTCTTAGCAGGATTTAGCACAACATTCCGTGCGTCGAGTGAGACAGTCGTGAGATCGCTTAGCCAAGATGAACGCCTCTGTTAGTTTTACTCTCATTTCTCTTGTTTTCCTTACTATGCTTTTAGCACAAACTAGAAGTCATGTGATACAAGAAACAACTTTTAGTTCCAAGAAAGAGGCATTCCCACGTGGTCTCCTAGAAATACTTCTGAGTCGACGAAAGTCTGGTACAGCGGTCAACACCTATTCTGATTACGTCACTGATGACGACATACTCAATGATGAAGACGTTTACCGAATGTTACCGGAAGTGAAGTGCGGTGCGTACCCGCGGGTCGAGCGGGTCTATCCCGCGACAGCCTCCACATCGCTTCCTCGCCATCCCACTTTTGTCATGCTTCATCGGTGCGCCGGGAGCTGCGACCAAACCTACTACGACTGCCAACCCGTACAGTCCAGCAGTTTCTACATTCCcgtcgatgacgtcataacaaATCAAGTAACGATGGTTTCCGTGACAAATCACACTAAATGCGCATGCTCATGCAAGATTCCTCAACCGCTGACCTGTGGCACGGACAAGCAATGGAACAGCGCGCACTGTCGCTGTGAATGCCGGGATCCGAAACCGTGCGACCGGCCGCTGGAGGTCTGGGACCCGAAAACCTGCTCTTGTTTGATGGTCAGATCTGATACCGGTAGTAGAACGCTACTTGATGACAAACGAGCGATAGGAGTTCACGAAATAGGCAAGAGACTCAACGCGGTAGATCTTCCCGACATGTATTGCGCACCCTACCCTAAGGTGGTACCAGTCCCCCAGCGGCACTTTTCTCAGTACGTCTTCCCAATGAACGTTCAACTCCACCGCTGCGCCGGCACGCCTCAATGCTCCATCGGCGGCTCACACATTTGTGCATTGAAACGGAGAGAGACAATCCTTCTAAAAGTCACCGAAGCTAACACGGGGAGTTTCAATTACGTCACTATGCATAACCACACTGCGTGCCACTGCGCATGCACCAAAAAACCTAGCGACTGCAATCAGTTCCAGCGGTTTGATGAAATCGCATGCGCCTGCGTTTGCAAAAGGAAATGGAAGTGTTCGGCGGGAAAGACGTGGAATCCAAAGCTCTGTTACTGCGAATGCGAAACACCTTGCCTGAAGGATCAGTCACGTGACCCGGTCACGTGTGCATGCATCAGAAGTTGGTGACACAGGAGGCCGGTTCAACACCGATTAAAATTTctcttttagaaaaaaaaaatacttctctCACAGATTGTTGTGGTACATGCATTTAGATACACACATTTCAACTGTTTCTTTGGTTTTATATTAATTGAATAATCGAAACAATAAtgataaattataaaaatgcAATACATAGTACAAAAAGGCAACAAAACATGACTATTAGTAATAATTGTTgtattttgttctttcgggtaGGTTAACACAAAGAACTCGATATCTCAAGGGTCTAACTTTAAATGAGAATAATATAGAAAAATTcgtcttttttcttatttgttcACTCTTGTtcatatgaaaataaaaaggggACCACCAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000521 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00341 all species →	PDGF	PDGF/VEGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR000072 all species →	Domain	PDGF/VEGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633 all species →	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0031954 all species →	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851 all species →	Molecular Function	growth factor receptor binding	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032241035.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241035.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

13.8Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.73	13.02
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.89	10.81
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	11.58	12.45
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	10.02	11.45
whole 6 week old aboral regenerate · regenerate uncut	3	3	11.33	13.77
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	5.65	9.31
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	11.21	13.58
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.08	9.47
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.12	7.34
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.09	7.11
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.26	8.74
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	9.40	11.82
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.38	10.22
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	4.97	7.92
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.52	10.10
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.46	7.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.02
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.03
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.13
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.81
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.19
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.67
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.45
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.45
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.83
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.45
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.79
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.83
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	13.77
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.72
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.52
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.31
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.65
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.58
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.33
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.73
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.47
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.85
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.94
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.34
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.01
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.11
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.83
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.35
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.74
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.12
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.93
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.82
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.20
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.16
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.22
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.17
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.77
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.92
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.01
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.10
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.37
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.