Gene detail

Detailed information of XP_032241067.1 in Nematostella vectensis

Genomic Location: NC_064042.1:8394683...8399948
NR annotation: XP_032241067.1, fibroblast growth factor receptor 3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032385176.2

GCACTGACTTCCGGTGTCTGTGATTGATCATGCTTCCAAACATAGCATAGGTTTGGCGGTATTCCGCCATGTTTTTCGACTTTCTCTTTCCTTTTTAGCGTGTATTAACCTTCAGATATGACTGAAATAAGTGTATGATAAAAAACTTCACTTAGAAAGTGGTCTACGATGCGTCCTTATTGGTGTGgttgcatattatttattgctattttgatcaagtGTTCCACTTGCTATGGCATAGTTAAAGGTTATGGTGAAACTTGCCAGAGCGATGAAGTAGATGTTGCTAAGAACCAATCAGCACAAGCACCTTTTGTGACAATTCTAAACTCAACAGAGCTTATTCTAGCCTTGACAGGGCAGTCACGGCGATTACTCTGCTGTATGGGCGGGTCCCCTAGGCCTTCGATCACATGGCTTAAAGATGACTCACTGTTGGATATTAAGGAAAATTACAAATTGGAAGTTTTTGAGCAAGGGCAGATTCTACAAAATTCAAATGTCTTGAAATCTGATGCCGGAAATTACACATGTATTGGGAGTAATCCACTTGGAAATGCAAGTCATTCTTTCTACTTTACTGTTCAAGaacGTCAGTGGGATTTTAACCCTATTATCCAAATGCATGCAGACCAATGGAATGCAACCATCTTTAGTAACATCACGCTGACATGTCAGATTACCAGCTCTAAAAAACCATTTGTCTCCTGGATCCACATCAAGAATTTCACCACACCATCCTTCCCGAGAGTAAGACACATTCTGACTAACAATGGTGGTGATAAGTGGACCACGTCACTTCCTATTGTCAATGTCAGTTATGAAGATGGTGGGAAGTATATCTGCAGATCCACAAATGCGATTGGGCATAAGAATGTGTCACAAGATGAAGGAGTGCTGTATGTTATGGATGAAGATAATACAATGGCTGGTCGTATGGGGAGTACGTCTCAGACAAGATCAGACAAGTCTCTGGTGATTGGACTCTCCCTTGGTGTCCTATTATTTATAGTTTTGCTTGTTCTATCTGCTCTTGTCCTGCGAAGGAGACAACAGCACCATGGTGTTGACTTCAAAACTCTTCTTTTTGCTGACCCAAAGCGGTTCATAGACCAAACGGAACTCCTAGCTCCAGAAGAAACGCATCACGAATTCGACGTATTCATCTCCTATTCAAGCCAAGATAGAGACTTGGTGAAAAACGTCTTCTACCCAGAAATAACAAGAACCCATAAAGTCTGCATTGACTTCAAAGACTTTGAAGCCGGTCTATATATAACAGATAACATCGCCAATGCCATCTTCAAAAGCCGGAAGACCCTTCTTATGATCACCAGAAACTTCCTTAGACGAGAGGGTGGCTGGACCTACTTCGAGATGCAGATTGCGCAGGGAAGACTCCAGCATGGGCATGACGTCCTGGTGCCTGTGATGCTGGAAAACATCCCACTAAATGAGCTGCCCTCGACTCTACAGCATTACCGTTCCAGACGCACATGGCTCGAGTGGTTCAACGAGGACGTCAGGCCACATTTCTGGGAGAGGTTGAGGGTCGCACTGGAGCCTAGTTTGTTTGAACATCAAGGGGAAGGAGCTGTCTAGGTTAACCCAAGGAGTCATAGTTATAGAGCTTGTTTTACATAATGAAGAGAGATCAGAGCTATTAAGTGTTGACCGTTAGATCAAGAGTGGCTTCGAGACCTAGTTTACTTGGACAGCTAGGCGAGAAGGGACCTGGCTAAAGTTGTCAGGTCGCCTTGGACTAGATGCCGTTGGTGTGAACAATAGGGCAAGCACGTTGCTAGAGGAGGGGACCGGACGCCATCCTGCTTAGGAGCCGAGAAAAGAAATAACGCGATAATGCGCTGAATGTCAATTAGATTCCAAGGATCTAGTGACCTCTACCCTCTTCAAAGTAAGTTATTATCTCTCTAGACCCCACTCTGCGTTTTTCTCTGGACACGCCCCTCTTAGAGGGATTGATAAATTCTTCTTTCAGAGAGAAAAATAGCGCCGCTCTAATAGGCTTTTCAAAAGCAAATAACGAAGGCGCGCTTAGACCAGGAGAAAGTGAAACGTAATAGAAGGATGGACTACTTTACGGCATACAATATGTGAACCTTGAAAAGCATTATAGCTATAATTTACATGAGCACCCGTTTGGCCAATGGCGGGACGCTAACACAGTCTGCTGCAGATCGGCGACCATGCACAGCTGTTTTGTCCGTGCAAGCTGCGCCATtacctgccagcattgctggcgaattttcgcttgactgactataggaAAAAGGAGATGTCAAAATGGCAAATGtactttctgacatttcctttgttttgtggtcagtcgagcaagaatttgccagcaatgctggcaggtgctggcacagtttgcacagggctttagGACTCGCCAGCATGGCATAGTGGTTTTCCCCCAGATAAACTATATCGGCAAAAAAATGCTTACTGGCTTCCGGCAATCAAGTAACGCTTTGCGTCGAAATGGCGGTATTTGATTTTCTGGCTTTTTTCTTAAGTTTCCGTTTACATTCTTTAATGGAGGGAATACTCTGTTCCAATCTCCCGCCAGCCTACCTTTGTGGAAGCATGACCGATACAAAAGACGGCTACGCGGGAGACTAggaatactaaaaaaaatcgcAGTATGATTGCATTCACCAATTTAATGTACTTGTTTGCGTCAGGCAGGTAAAGGAAGGAATATAGAATCTCAGTCTcgagaaaaatagaatcgttGTTACTGTGTCGTCGTCAGTTAGGAAGAGTATTAGAGTGTTGTGATGCCAGGGCTGTCTGGTAGGCGCGAATGACGGCTTTCAAGCCTGTTCTGCACATTGGCAAGGTAGAAAGATGAATAATGGAGTTGTGATGTGGAATTTCGTTTGCACTTTATTAACAACAAATCAAACTGGACATCAATAA

Protein

Uniprot

Uniprot term	Description
Q0GC71	Toll-like receptor 2 OS=Capra hircus OX=9925 GN=TLR2 PE=2 SV=1
B2LT62	Toll-like receptor 2 OS=Capra ibex OX=72542 GN=TLR2 PE=3 SV=1
Q9V477	Toll-like receptor Tollo OS=Drosophila melanogaster OX=7227 GN=Tollo PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047	ig	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR017241	Family	Toll-like receptor	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0002224	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05173	IL18R1, IL1RRP, CD218a; interleukin 18 receptor 1	-	CD molecules	ko04090	deepkoala