Gene detail

Detailed information of XP_032241162.2 in Nematostella vectensis

Genomic Location: NC_064035.1:2672069...2681071
NR annotation: XP_032241162.2, ankyrin and armadillo repeat-containing protein [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5515532

ATGACTTCTAAACTTTCTCCCAGTGGTTTGGGACGTTCTGCAGGGTCTGGCTCTGACATGATGTCCAACATAACAGCAGCTAGGGCAGCCGCGACCTACTTCGATAAAATCGATCGCTACGAGCTTCAGGAATCACTGGCCTATTACTCAAGCGACTGGCTGCTTTCAACTGAAGACACTCGTATTACAGTAGAACCACCGGTTGGCTTAATCTCTGGTATAAAAGTACACAATAATTTTAATAATGCCTTGATTTTGATACCTCACGAAGAAGGTATTGAGCCATTGGAAATGCGAGAAATGCATGAAATTGTACGAGAACTTGTCACTGGGATTTTCATATTAAATCAAGTTCCTTCAATTTGTCTGGAAGCAAATTACGATTGCAGTACATCATGTCAAATACCACCTGCTTACTATGATACACGTGTGGGTCAGTTACTGACAGAGGTAGACTACATGATGAAGAGCTTATGGCATGGTGCTTACTTCCCAAAGGACAAACGGACAAAGTTTGCTGAGCGATGGAGACAGGCTGTCAATCTAAACACTACCACAGGAGAGCCAGAAACTCGACGGAGCCTGCATCTGGTCTGGACAGAGGCAGGAATCCAAGATCTTGCAAAAGACCCAGAATTCATGGCAGCATATGAAACCCTCCCCCCAGAGAACAAAGACGATCCCTTTGCCATGGAAGAGAAGAAGACATTCATGAGGCATGTTGATGATTTAGCCCTAAAGCTTACACTGTTCCAGAAGCAAATACACCAGCACCAAAATATCTTCTTAGTTGATGCTGATTATCACATTAGTAGCATAGTGAAGTCAGACAAACTTGAATTCCCAATTTATGAAAAATTGCAACGTCGAATCACATCTCATCAAGAGTTCATCAGAAAATTTTTACCTTTAAAGGCTGAGCTCCATCGACATCTAGTGCTGCTGAAATTTGTAAGTTTTATGGTTCCATTCCTTATTGCTATCAAAAAGCGCTGCAAAGTTCCTGATGTCTCAAAACTTTTACCACCATTTACATTCGAGGAATGCAAGACAGAACGTGAGTTCCCTCCCCTTATCCTTAGACCTGACTTTACCTGTAAGAACTTTGAGAGCTCAGAGAAGTATTTCCATTTGCATGGGGGAATTGTGTTTGATCGTGAAACTGGAAGCACTGTGCCTCTGAGTGACAGTATAATTGCAGAGAAGGAGAATTTGGAGTATGTTGCGTCAGATGGATACAGCAAGGCAAGTACTGACTCTGTGATGCTGGAAAGTTATCCAATGAAACTTGTGGAAGTTAATGGAAAGAGCTACTATGTTTTGAACATTGTGCTAGAAACGTACTATCCTGCATCTCCAAAGCTTCCTCTTTGGGTTCACGCACATTATGATGAAATAGCCAAGCTCAAGCCTAAGAGGCTACCTATTCCTGAATTGCAAATCCATGAGCAGTTCAAGAAGAGATATGGCTACCAGAAGACGGTAAAACTCAAGCAAATCCCAGCAGGTTTGCATGCAGCTGCCGTAAGAGGCCTTGTTGCAATATTCTATACAATGTGCCGCAGACTTCCCCCATCAAGACTCACCACACAGGACTCTACTGGGTTGTCATTGATTCATTATGCAGCAATGTACAATCGACCACAAATCATTACGATGCTGATGGTGATGGGTTTTGACATTAACGTGAGAAGGTTTAACAACATTTCTTCTCAGGGTGTTACTCCGCTCCACCTTGCCGCAAGATGTGGTGCCCTGGAGAGTCTTGCATGCTTGATTTCTTACAAAGCTGATGTGGGTAGCATTGACAGTCATGGATGGTCCCCTGTCCACTATGCCGCTTACTTCAATCACGTTGATTGTCTTCTGCATTTGATCCACAAGGACACAAAGCTTTTGCAACTGCAATCTAAAGATGAAACCCTATCAACACCAATCCTGCTATCAGCATCTAGTGGTGCGTTGGATGCGGTGAAGTGTCTGATTGAGCTAAATGCTGATTACACAGTCACCAATAATCATGACAATGGGATGATCCAGTTGGCCTCCCTGCATTTCCACACCAACATCCTGGAGTATTTCATTGAGTGGAACAACAAAGACCTGCCAGTCTGGGATATTCTTGTAGGTATGCTGAAGTCAGAACATCTTGAACGACAAAAGAGTGCCGTCAAGTGCCTTGAGGTACTGTCAGTCGCCAAGGATAATCACTGGAAGTCCATCCTCTATGCAGGAGGGGTGCCTGCTCTTGTCACCTTGCTGAAGACGGATGATGAAGACCTTCAAGGGTGTGCAGCTTCTGTCTTGTGTAACATCGGTAGCCATGAAGAAGTCAGGCTTGAGGTGTCAGCTGCAGATGCTGTTGTGGTTGTCATAAAGCTCCTGAATTCACCAGTGGCTATGATCCACTCCCGATCTGCTGTCATAATTGGTGATCTTGGCTGTGTTAGCAACAACCAGGAGAAAATTGCTGAGGAAGGTGGCATTGAGGCCCTGGTTGGACTGTTAAACTCAGATGTGGAGCATGTACTGGTGAATGCTGTTAACGCTCTCAGGGTCGTGGCAGATGGCAGCAAATCTAACCAGAAGGCCATAGCAGAAAGTGGTGCTTTGGATATTCTTATCAGTCTTCTCAGCACAAGATCAAAAAAGCTTCAAGCAAACACAGCTGCCTGCCTCAGTTCTTTAGCTAAGTGTCACCATGACAACCAGGACCTGATTGTTGCCAAGGGAGCTGTTAAGTCCTTAGTAACACTGGCACGTTCCAAGAGCTCTGTGTGCCAAGTGAAGGCAGCAAGTGCTCTCGAGGCTCTTGCTGAGAAAAACCCAGAGGCACAAAAAATCATAGATGAAGCTGACGCACCTAAGCCTCTTATTCGTCTGCTCAAGATGTGGTCAATTGAGGTGAAGGAGCAAGGTGCCGGAGCACTGTGGGCTCTTGCAGGGTCAGTGCGCTCGCACCAACAACGCATCGCAAGCATGATTGGAATCAACATCCTGGTTGATATGCTCATGCTTAAATCAGAGCGACTTCAGTACATTGCAGGCTCAGCTATGATTGCACTAGCGACAGAAAACATTGAAAACCAGAACAAAATCGTGGCAGGGGGTGGGGTGCTACCATTGGTAAGGCTCTTACGTGCTGGCAAATCATCACAAAAGGTGCTGCTGATGGTTATTCGAGTGTTGGGTATCCTGTGTGTGGGCGTGGCCCACCAGTCAAATAAGTCGACACAGGTGGAGATTGCGAATGCTGAGGCCCTGGTCACACTGGTCCAGCTATTAAGGTCCTCCAAGGTCCCGCTCATACAGGTTGAGACAGCCATCACAATCGGCAAGATTGCACTGAATAACAACCAGACACAGAAGGTGCTCGCTGAGCAGACTCGCTTCCGGGTCATTGACATACTCCATCTTCTCAAGGATGAGGAAGAAGAGGTGCGCCTGAAGGCTGGACGCGCTTTATCTATCTTCGGATACAACAACACCTCCCAGCAGTATGCCATCAAGAATGCAGGTGGAGTCAAACTTGCTTCCTTTGAGGAATTCCTTGAATCCTCCACGCAACTTTACCGGGCACATGCCGCATTCCAGATCATTGTCCTCGCACGTGTAATAGTTGACTGTGACCAAGTGACGTTGACTGCCCGTGGAGTCCAGCTCCTTGTGTCGCTACTAGCTTCAGATGAGGACCACACCAAAATACTTGCCGCCAGCCTTACAGCCAGTCTTGGCCACACAAGGGCTGGTATACCCGCGGCTCTTATCACAGCAGGAGCTGTCAAGGCGCTTTTACAGAATCTGTTTAATGCAAACGAGGAGGTTCGCAGCAGTGCTGCCGTTGCGCTGGGATACCTGTCGTTCGATCGCACAGCGGAAAGACTGATGCTAGTAGCGTGTCGTAACACACCTGGACTATTCGACGCTCTCTTGCGGAACCTCGGCAGTGGCAAGATCGCCATGGTGTTTGTTGACGACTGGAACCAGACAAAAAACGTCGGGCTTCCGTCAGAAAGTTTGGAGATCAACGGTGGACCTGCAGTACCGAAGAAACTTCCACCCGGGGAACGTCGCCGAAGGCCGCACACGACACAAAGCCTTCCTTCTGTTCGTCACGCGCGAAGCGTGCGCGATCGCGCCAAGCGTGTAGCATCCGCACCTGTTATAGACAGCTACCGCAACCGTGTAAAGGCTGATGTTGTGCGCGCCATGCGACCGACCACACCCGGCGAGGAGCGCATAGCTGCCATGGAGTCTGCGGCAGGGGCGGCTAGCATTTGGAAGACCAAGCTGCTCTCCCATCGACCCAAGGCAGTAGAAAGAAAGCTGAAAAACTTGACGATTCATGAACCAGACGCTAGCGACCAGTAG

Transcript

rna-XM_032385271.2

GTGATCGCGCGTATGACAACGAAATGTTTTGATGATGGAACGATTGATCGTAAACCGTGGAGAAAGAAGCGTCTATGGAATAATAGTACTACACTCTACGACAGCAAATCATCTACGCTTAATTATGACATTCCTTTTAATGGTATGACTTCTACCGAGGAATTCGAATCTCTTTGATGTGATTTCAGGATAAGTGTTTTCGTAAACAACATACTGTACGTTTCTTGTGGTACATTGTAAAAGATAGCGTAAAGTCGGAATTGTTCGAAAAAACATGGCCTTATAATAGCATCCAGTCTGAAGGTGAAGATATTTTGAATTTCTGGTGACTTTCAAACAGTTCAAGCGCTTGTTACGATATGACTTCTAAACTTTCTCCCAGTGGTTTGGGACGTTCTGCAGGGTCTGGCTCTGACATGATGTCCAACATAACAGCAGCTAGGGCAGCCGCGACCTACTTCGATAAAATCGATCGCTACGAGCTTCAGGAATCACTGGCCTATTACTCAAGCGACTGGCTGCTTTCAACTGAAGACACTCGTATTACAGTAGAACCACCGGTTGGCTTAATCTCTGGTATAAAAGTACACAATAATTTTAATAATGCCTTGATTTTGATACCTCACGAAGAAGGTATTGAGCCATTGGAAATGCGAGAAATGCATGAAATTGTACGAGAACTTGTCACTGGGATTTTCATATTAAATCAAGTTCCTTCAATTTGTCTGGAAGCAAATTACGATTGCAGTACATCATGTCAAATACCACCTGCTTACTATGATACACGTGTGGGTCAGTTACTGACAGAGGTAGACTACATGATGAAGAGCTTATGGCATGGTGCTTACTTCCCAAAGGACAAACGGACAAAGTTTGCTGAGCGATGGAGACAGGCTGTCAATCTAAACACTACCACAGGAGAGCCAGAAACTCGACGGAGCCTGCATCTGGTCTGGACAGAGGCAGGAATCCAAGATCTTGCAAAAGACCCAGAATTCATGGCAGCATATGAAACCCTCCCCCCAGAGAACAAAGACGATCCCTTTGCCATGGAAGAGAAGAAGACATTCATGAGGCATGTTGATGATTTAGCCCTAAAGCTTACACTGTTCCAGAAGCAAATACACCAGCACCAAAATATCTTCTTAGTTGATGCTGATTATCACATTAGTAGCATAGTGAAGTCAGACAAACTTGAATTCCCAATTTATGAAAAATTGCAACGTCGAATCACATCTCATCAAGAGTTCATCAGAAAATTTTTACCTTTAAAGGCTGAGCTCCATCGACATCTAGTGCTGCTGAAATTTGTAAGTTTTATGGTTCCATTCCTTATTGCTATCAAAAAGCGCTGCAAAGTTCCTGATGTCTCAAAACTTTTACCACCATTTACATTCGAGGAATGCAAGACAGAACGTGAGTTCCCTCCCCTTATCCTTAGACCTGACTTTACCTGTAAGAACTTTGAGAGCTCAGAGAAGTATTTCCATTTGCATGGGGGAATTGTGTTTGATCGTGAAACTGGAAGCACTGTGCCTCTGAGTGACAGTATAATTGCAGAGAAGGAGAATTTGGAGTATGTTGCGTCAGATGGATACAGCAAGGCAAGTACTGACTCTGTGATGCTGGAAAGTTATCCAATGAAACTTGTGGAAGTTAATGGAAAGAGCTACTATGTTTTGAACATTGTGCTAGAAACGTACTATCCTGCATCTCCAAAGCTTCCTCTTTGGGTTCACGCACATTATGATGAAATAGCCAAGCTCAAGCCTAAGAGGCTACCTATTCCTGAATTGCAAATCCATGAGCAGTTCAAGAAGAGATATGGCTACCAGAAGACGGTAAAACTCAAGCAAATCCCAGCAGGTTTGCATGCAGCTGCCGTAAGAGGCCTTGTTGCAATATTCTATACAATGTGCCGCAGACTTCCCCCATCAAGACTCACCACACAGGACTCTACTGGGTTGTCATTGATTCATTATGCAGCAATGTACAATCGACCACAAATCATTACgatgctgatggtgatggGTTTTGACATTAACGTGAGAAGGTTTAACAACATTTCTTCTCAGGGTGTTACTCCGCTCCACCTTGCCGCAAGATGTGGTGCCCTGGAGAGTCTTGCATGCTTGATTTCTTACAAAGCTGATGTGGGTAGCATTGACAGTCATGGATGGTCCCCTGTCCACTATGCCGCTTACTTCAATCACGTTGATTGTCTTCTGCATTTGATCCACAAGGACACAAAGCTTTTGCAACTGCAATCTAAAGATGAAACCCTATCAACACCAATCCTGCTATCAGCATCTAGTGGTGCGTTGGATGCGGTGAAGTGTCTGATTGAGCTAAATGCTGATTACACAGTCACCAATAATCATGACAATGGGATGATCCAGTTGGCCTCCCTGCATTTCCACACCAACATCCTGGAGTATTTCATTGAGTGGAACAACAAAGACCTGCCAGTCTGGGATATTCTTGTAGGTATGCTGAAGTCAGAACATCTTGAACGACAAAAGAGTGCCGTCAAGTGCCTTGAGGTACTGTCAGTCGCCAAGGATAATCACTGGAAGTCCATCCTCTATGCAGGAGGGGTGCCTGCTCTTGTCACCTTGCTGAAGACGGATGATGAAGACCTTCAAGGGTGTGCAGCTTCTGTCTTGTGTAACATCGGTAGCCATGAAGAAGTCAGGCTTGAGGTGTCAGCTGCAGATGCTGTTGTGGTTGTCATAAAGCTCCTGAATTCACCAGTGGCTATGATCCACTCCCGATCTGCTGTCATAATTGGTGATCTTGGCTGTGTTAGCAACAACCAGGAGAAAATTGCTGAGGAAGGTGGCATTGAGGCCCTGGTTGGACTGTTAAACTCAGATGTGGAGCATGTACTGGTGAATGCTGTTAACGCTCTCAGGGTCGTGGCAGATGGCAGCAAATCTAACCAGAAGGCCATAGCAGAAAGTGGTGCTTTGGATATTCTTATCAGTCTTCTCAGCACAAGATCAAAAAAGCTTcaagcaaacacagctgcCTGCCTCAGTTCTTTAGCTAAGTGTCACCATGACAACCAGGACCTGATTGTTGCCAAGGGAGCTGTTAAGTCCTTAGTAACACTGGCACGTTCCAAGAGCTCTGTGTGCCAAGTGAAGGCAGCAAGTGCTCTCGAGGCTCTTGCTGAGAAAAACCCAGAGGCACAAAAAATCATAGATGAAGCTGACGCACCTAAGCCTCTTATTCGTCTGCTCAAGATGTGGTCAATTGAGGTGAAGGAGCAAGGTGCCGGAGCACTGTGGGCTCTTGCAGGGTCAGTGCGCTCGCACCAACAACGCATCGCAAGCATGATTGGAATCAACATCCTGGTTGATATGCTCATGCTTAAATCAGAGCGACTTCAGTACATTGCAGGCTCAGCTATGATTGCACTAGCGACAGAAAACATTGAAAACCAGAACAAAATCGtggcagggggtggggtgctaCCATTGGTAAGGCTCTTACGTGCTGGCAAATCATCACAAAAGGTGCTGCTGATGGTTATTCGAGtgttgggtatcctgtgtgtGGGCGTGGCCCACCAGTCAAATAAGTCGACACAGGTGGAGATTGCGAATGCTGAGGCCCTGGTCACACTGGTCCAGCTATTAAGGTCCTCCAAGGTCCCGCTCATACAGGTTGAGACAGCCATCACAATCGGCAAGATTGCACTGAATAACAACCAGACACAGAAGGTGCTCGCTGAGCAGACTCGCTTCCGGGTCATTGACATACTCCATCTTCTCAAGGATGAGGAAGAAGAGGTGCGCCTGAAGGCTGGACGCGCTTTATCTATCTTCGGATACAACAACACCTCCCAGCAGTATGCCATCAAGAATGCAGGTGGAGTCAAACTTGCTTCCTTTGAGGAATTCCTTGAATCCTCCACGCAACTTTACCGGGCACATGCCGCATTCCAGATCATTGTCCTCGCACGTGTAATAGTTGACTGTGACCAAGTGACGTTGACTGCCCGTGGAGTCCAGCTCCTTGTGTCGCTACTAGCTTCAGATGAGGACCACACCAAAATACTTGCCGCCAGCCTTACAGCCAGTCTTGGCCACACAAGGGCTGGTATACCCGCGGCTCTTATCACAGCAGGAGCTGTCAAGGCGCTTTTACAGAATCTGTTTAATGCAAACGAGGAGGTTCGCAGCAGTGCTGCCGTTGCGCTGGGATACCTGTCGTTCGATCGCACAGCGGAAAGACTGATGCTAGTAGCGTGTCGTAACACACCTGGACTATTCGACGCTCTCTTGCGGAACCTCGGCAGTGGCAAGATCGCCATGGTGTTTGTTGACGACTGGAACCAGACAAAAAACGTCGGGCTTCCGTCAGAAAGTTTGGAGATCAACGGTGGACCTGCAGTACCGAAGAAACTTCCACCCGGGGAACGTCGCCGAAGGCCGCACACGACACAAAGCCTTCCTTCTGTTCGTCACGCGCGAAGCGTGCGCGATCGCGCCAAGCGTGTAGCATCCGCACCTGTTATAGACAGCTACCGCAACCGTGTAAAGGCTGATGTTGTGCGCGCCATGCGACCGACCACACCCGGCGAGGAGCGCATAGCTGCCATGGAGTCTGCGGCAGGGGCGGCTAGCATTTGGAAGACCAAGCTGCTCTCCCATCGACCCAAGGCAGTAGAAAGAAAGCTGAAAAACTTGACGATTCATGAACCAGACGCTAGCGACCAGTAGGGTGCACGCATCCTTGACCCTGCCGTTCTTATCGGGGCTCCTGTGCAGAGATGACCTATGGAGTACTGCGGAGCCTGGGACAGACCCTGCCGTTCTTATCGGGGCTCCTGTGCAGAGATGACCTATGGAGTACTGTGGAGCCTGGGACAGACCCTGCCGTTCTTATCGGGGCTTCTGTGCATAGATGAACTGCGGAGCCTGGGACATGGTGTCGAACTTTTGATAGCCCACCACAAACCACAAGTTCTGCCAGAACACGTGACTACGGGAAAATGCAAAGAAGATAGAGCCACTTTAGGCTTTTCCTGATCACGGGGAGGTAGCCTGGAATTTTTTAGCTTGGGTTTGCATGGAAAggatttatttgaaaaagtgAAATTCATAGCCTGCTTTCCGGCTCTGATTTTCGGAGTTGTCTCCGAGTTCATATGCTTCTGGGGAGCAActtcagaatacccgtccactgTGGAGCCACGTTACTGCCGTGGTCCGCGGTCCGCTGTGAAGCCGTCTTTGCATATTTATAGAACGAAGTATCAAATAATAAGTCTAAGTAATCTAAGTCACTGCTACCGTGGTCCGCAGTTCGCTGTGTAGCCGTCTGTGCATATTTATAGACAGCGGACCGCGGACCAACCAATTTCGCATTATGGATGAATAAGTAGTCTTTGACTGCGGACCGCGGACTGCGGACCAACATGATATATCCgattataatttaattgtgtaatgatggatattttatattagtagtattataaatTAATTGTGCAATGTTGGGCACTTTACATTAAGTAGTTCTGGACTGCGGACCGCGGACCGATGAAATTTAGAGGCCTTAAAATGTGGACGGGCATTCTGAAGTTTAGCCGCTTCTGGTGGCGATAGACCAGCGCATTGATGGTTTTGCCGGTCCTGTGTTCATAGTagatatcaaatattattaaagGATCAGAATATGTAAATAATAGATAAACATCTATAGACATTGGAGTATAGAGTGAAAAAGTTAAATTAAGTTATTTGCCCACATACACAAAAACGGCACTGTATCACAAAGGAATAAATAAAGAGACACTACGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z5J8	Ankyrin and armadillo repeat-containing protein OS=Homo sapiens OX=9606 GN=ANKAR PE=1 SV=3
A2RT91	Ankyrin and armadillo repeat-containing protein OS=Mus musculus OX=10090 GN=Ankar PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007358 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR043379 all species →	Family	Ankyrin and armadillo repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46464 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032241162.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241162.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

11.0Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.88	6.67
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.61	5.92
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.30	4.70
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.80	9.29
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.50	10.98
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.12	6.35
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.22	6.91
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.49	5.82
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.75	6.78
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	7.18	10.78
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.05	6.70
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	5.87	9.06
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.50	6.02
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	2.60	4.68
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.94	6.22
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	4.05	7.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.67
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.32
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.65
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.92
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.52
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.40
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.70
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.20
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.00
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.29
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.83
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.28
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.98
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.78
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.73
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.35
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.91
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.74
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.82
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.26
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.40
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.78
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.47
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.78
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.87
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.89
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.70
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.36
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.08
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.06
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.43
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.11
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.02
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.27
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.22
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.68
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.12
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.22
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.61
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.06
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	5.07
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.