Gene detail

Detailed information of XP_032241197.1 in Nematostella vectensis

Genomic Location: NC_064035.1:2633359...2640973
NR annotation: XP_032241197.1, KAT8 regulatory NSL complex subunit 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385306.2

TGTGACACgcgcaaaaaatatatatgtgaaTTTTCCTCCTGTATGATACCACAGCCAAACCGAGAAAACATTTTGTGATGGTCCAACAATGtaatgggtttcctgtggtaatGCCATGAAGCGTCGATTTACAAAATGGCCGAAGGGAAAATTGAGCGAGAAGTAGGACAAAATGAAACACAGAAGTCAAGCAACCTTTGCTGCTATTCACAGAGAGTTTGCTCTCTTGAAAAACTAAAAGGATTCGACTTCTGTCACAAGCACATTCTGGAAGACAAAGCTAGCCCATTCAAGCCCTGTGATTTTCTAGCGAAATCTAATGGAAAGAGGTGCACTAACCCCGCGCCTAAACTCCCCgacaaagaaaaaagCTATTGTATAATACACACACGCAAAGCTGTACTGCGCAGAGCTGTGGAAAAGAGAAGGAAGCGACGTCAGCGTAAACAAAGACAAGAGGGAGAGGGTGATTATGGCGAGGACTACAACCGTGCCCCAGCCAAAAGGTGGCGGCATTTGTCCAGTGCTAAGAGTACAGATGAGCCTCAAAGccaagatgatgatgatgatgaagaggaggatgatgatggtgcCACTGAGAAAAACTCATCAGATGAGGACGTGGCAGGTGGGATGGAAGGGAGTCTTAAGGTGGACAGTGCCTGGCACGGAGACGTAGATAGTGATGCAGAATCTGTGGATAGTGACGATGGAGACATTCTGAGACATGCTGGAGTATGGACTGTAGATGAGGCTATACGCTCATGCTGTGACAAAATGGTTCAGTTGAAGACCCTTTATGTAGGCCAGTACACTAGGCTTATACACGTCCTCCAGGAAAAGAGGCGCAAGTATTACCAGCTCATTCAGGCAGAGGAAGATGAAGAGACAGGGGAGTGCCTTTTGAGCCCCACAGAAATCCTTGGCCCCCTCCGTACACGTAGGAAGCATGGCACTGAAGCTCTATTGCACAAGCAGGCTAAAGAGAAGAGGCAGGGCTTTAGTGTCCGGCATCACAATCCAACTGCAAATCAATGTACCCATAGTGTTGTGGGTATACGCTGTTGTGAGAAAGTACTGCCTATGACAAAGTTTTGTATGAAACACATTATCCACGATCCTCAGCAGTTACTTTTCCAGGGCTGTTCTTTCTTGTCGGGAGATGGAGAACCATGTAGTCATAACGTGCCTAAAATATACCCCCACACCATGTGTCGACTACATGTGACTTTACCagaacaaccaatcagaaccAACGTGGAAAAGGACCTGCAAGATGCTAAGGACAGGGATTGGTTACGCATAGAAAAGCAGAAGGCAGACAGAGAAGCAAAACCACTGAGTGACCTCCCTGGCACTGATGCAATCATAACATCACCACAGATCAAAGATAAGGAGATCCCGATACCAAAGGCACTGCAGGAGAAGTCGAGTGCACTCCTTCCTCCTCCCCAACCAAAGTTAGAGGGGACTCCGCCTCCTCTCCCTTCTCAACAACCTGATCATCTACCAGATCAGCAGTCCAGTGATGCGGGTGAGAAAGAGTCTACCTGCTCCACGCAGGAGGCATCTCTGAGTGGGATACAATCTTTTCAGCCCGCACCTAAAGATGTCCTGAGTCCCGCGTCTGTGGAGTTTTCCCCTGGAATACAAAATATTTCTCCAACACTGCTAGAAGCAAGTCTGGTAGCAGTTTGTAGCGGATCTTCGGTCATACCAAGCGTCATATCCACAAAGAATGGCGAGAACGTCACCACTTCAGTTACATCAGTGTCCGCGTCATCAACTAGCGTATCGGAAGCTACTAAGGATAACCCCCCTGTCTGCAGTTCTACCGTGTCGCAAGCTGCTACTAAAGCATCGGAGACGAAAAGCCCCATGAATACAAATGGTTCAAATACCGTGTTAGACGCCATTAGCCCTATGGATACAAGCGATTCTAATACGAGAAGCTCAGCGGGGCCAACACCTGGGTGCAATACTGCGGCGGTAGATACTACTGCTCTTGATCGCTTCCCGACCGCACTGAACACAAACCAGCCTTCAAAGAACTCCTCAGACGTCACAAATCCAGACTTCCTCGAGAATAACACAAGTAGACAACAAAACGTTTGAGGACGTTCCAATGATACGCGAACCAACCACTGAACCACATGATGCCAGCGCTACAGCCTCGACTGATGATACGAATATGGAGGTAGATGATGCAAAGAATGCCTCGAATGAGCCTCGAGGACATGTCTTAGGGAACAACGAACACGCTAGGTAAAACAAGTTACACTTTAGCTTGTTTCAGCATGGATTCTAGGGCTCCGAGGGATATCTTCGAGTGAGAAGAAGACGTAAAGCAAAGTAATTGACAGCAGAGCTTTCTTGGATTCTCGTGCACCTGTGTCAAGGGACTTCTCGGTAGAAACTGTGAGACTGTTGTCATCGGCCTCGCCCTATCTCGTTGTATTCatttgttattttacatgGTGGACTTTGAGGCCTTCGTGTGTCGTTCTGTCAAAATGAACCTGAAATATAGGAGAATTTAAAGCTTTTTACTTAAGGTGACTAATAAATTTTTGCGTTCTATTATGTACCTCTAACACTGTTCAAGCTTTGCACTCTTCTAAGAGAATAATATAGTAAACTGTTGAAATCTAGGCTTTATGAATGAACTATTATAAAAAGTCTCCATTATGTGAGGGATAATATCTATGTAAATCTCAACTACCTTCATTAAATTTTTGTGCTTTTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R802	KAT8 regulatory NSL complex subunit 2 OS=Pongo abelii OX=9601 GN=KANSL2 PE=2 SV=1
Q9H9L4	KAT8 regulatory NSL complex subunit 2 OS=Homo sapiens OX=9606 GN=KANSL2 PE=1 SV=3
Q6AY70	KAT8 regulatory NSL complex subunit 2 OS=Rattus norvegicus OX=10116 GN=Kansl2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007313 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13891 all species →	zf-C3Hc3H	Potential DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026316 all species →	Family	KAT8 regulatory NSL complex subunit 2	Interproscan
IPR025927 all species →	Domain	Potential DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13453 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0043981 all species →	Biological Process	obsolete histone H4-K5 acetylation	Interproscan
GO:0043982 all species →	Biological Process	obsolete histone H4-K8 acetylation	Interproscan
GO:0043984 all species →	Biological Process	obsolete histone H4-K16 acetylation	Interproscan
GO:0044545 all species →	Cellular Component	NSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18401	KANSL2; KAT8 regulatory NSL complex subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241197.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

15.9Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.22	12.02
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.39	10.02
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.59	8.01
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.09	8.75
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.62	7.17
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.40	13.66
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.10	9.59
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	12.00	13.86
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.15	11.28
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.44	12.12
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.20	9.02
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	7.26	11.10
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.29	12.14
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	9.46	15.87
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	5.78	8.93
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.79	8.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.02
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.23
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.42
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.02
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.37
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.77
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.01
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.67
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.08
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.75
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.54
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.00
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.17
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.05
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.63
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	13.66
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.55
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.59
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.71
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.86
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.88
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.26
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.28
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.18
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.12
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.95
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.26
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.02
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.94
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.65
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.10
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.67
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.14
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.89
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.84
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	15.87
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.52
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.93
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.41
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.37
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.