Gene detail

Detailed information of XP_032241201.1 in Nematostella vectensis

Genomic Location: NC_064035.1:2957290...2963079
NR annotation: XP_032241201.1, solute carrier family 40 member 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5515544

ATGGAAGCCGACAACGATGACAGCATTCGAGAGCTCGATCTTCCCGACTCGAGGACAAACCATGGTAAATCAAGAAGGTGTTGCAACTTTACCCCACAGACCCTGGTGTGCTTCAGCCATGGTCTCTCAGCCTGGGGAGACCGAATGTGGGAGTTTGCTGTGGCCCTGTACCTTGTTGAGCTGACTCCAGGCTCTCTGAGACTGACCGCTATATTTCAGTTGACGAGAACACTGTGTACCATTCTTCTTGGTCCATATGTTGGAGCATGGGTGGATGCAAACCCTCGCCTTAAAGTTGCACAGAGGTCCCTAGTGGCACAGAATCTAGCAGTTGCCGCATCTGCCCTGATTCTCCTTCTTATCCTCTCCGTCAAGTTATTCCATGGCTTATTTGTGCTTCTTGTCGGCCTAGCAATATTTGTGGCCTGCTTTTCTGTGCTGGCTGGTATTGCAACTAAAATTGCTGTTCAGAAAGACTGGGTTGTTGTCATATGCCAAGGCGATAAATCTCTTCTTGCAGGTACCAATGCCATAATGCGGCGAATTGACCTCGTCTGTAAGATCTTGGCACCAGCACTCGTAGGGCAGGTCATGACTTACGTGTCCAAATCAGCCGGCGTCATCCTTATCGCCTCATGGAACGTTTTATCAGTCTTTGTTGAATATTTTATGCTGTTGAGGGTATACCACTCAGTACCATCCTTGGCCCACAAGAAAATTGACAAGAAACTTACCCAACAAGAAAATCCTCAAGAATCGCAGGAAGAAATACGGGGATCTAGGGATAGGCTAGTCTTTATGGAGACTGAGGGAGGGGACTCTGAGGCTTTGGTCTCACGTCCCGGATCAGCCTTGCCCCAAAGCCCTCAGACTTCCCGTCCTAAACCAGGTATTATACAGCGCCTAAAGACCAGGATCACCACCACCAAGTCAGTGTGGCAGGTGTACATGCGCCAGGAGGTCGCGCGACCGGGTGTTGCCCTTGCAATTCTGTATTTTACAGTCATAAGCTTTGGATCTGTTACCACTGGCTATCTCTATACACAGAATCTCAGTGAGTCTCTACTTAGTATTCTTAGAGGTGTTGGCGCGCTGTTTGGAATTGCTGCCACTTTCGTGTTTCCGAAGCTAAGAGACTCTATTGGACTTGTGCGCTCGGGGTTGTTTTCAATGTCTGCGCAGTTCATTTGCGTATTGTTATGCTTGGGTGCTGTACTCGCGCCAGGATCCCCATTTGAGTTGCTTCCTGATAGCTGGCGTTACCATGGTAATGTCATCGCGCGTAACACGTCAACGACTGTTGCCATTGGCAACTGTACTTTGAGTGGGTATACTTTTACCCGTCATCCACGTTTCAACCTTGATTTAGAACTCAATGCCACAGGAGCAGAATCAATTGGTCTTGAATACAATACAACTGTCGGGGTATCTACCATCCTCCCCTCCCCGTATAGCCTCGAGACCACCGATTTTGTCTCTATAACCCCTCATTTGTATACGTCCGCTACTAAATTGCCTACCGACGCAACTATAGCGTCCTCAACTTTTGCCGCCATCTTTACGCCTTCACCAACCATCCTTGCCTCGGCAACTCTGTCAAGCTTGCACCCCTCAAACAGCTCATTCCCTAACAACTGCACATCCTACACCAAGCACACGGTCGTCAAATCCTACAACTTCTCGTACGTCTCCGTGATTTTGCTCCTCAGCGGGATCATTACGTCACGGTTCGGTCTGTGGCTGACTGATCTCACCGTCACGCAGCTACAACAGGAAATAGTTGCTGAGGAGGAAAGGGGACGCGTGGGGGCCGTCCAGAAGTCTCTGTGTTCAATGCTAGACATGGCCATTTACGTGTTAGTTATCTCGCTTCCTCTCCCGGAGCAGTTCGGCTACATGGCCATCATATCTGTGGCCGCTGTCGGATTCGCCGGGATCCTGTATGCCTCGTTTTCGTACAAAGTGCGCGGTCATTTGTTTCACCTTGAGAAGGTCAAAGGTTGTGGTTATCGGAGAAAGCATCCCACGGTTTCGCGGTCACCGGAAGTTTTGTCTGCGTCACGTGATAGCTTAGGTAGGGAAAGGCAGGACGAAAATGCTGGTGATGATGATGAAAAAGATATGCTACAAGGTGTGATGTCAACCAGAAATGAGAATTTCAAATTCTGA

Transcript

rna-XM_032385310.1

GCTGTgctttaacaaaataaaaatggaagCCGACAACGATGACAGCATTCGAGAGCTCGATCTTCCCGACTCGAGGACAAACCATGGTAAATCAAGAAGGTGTTGCAACTTTACCCCACAGACCCTGGTGTGCTTCAGCCATGGTCTCTCAGCCTGGGGAGACCGAATGTGGGAGTTTGCTGTGGCCCTGTACCTTGTTGAGCTGACTCCAGGCTCTCTGAGACTGACCGCTATATTTCAGTTGACGAGAACACTGTGTACCATTCTTCTTGGTCCATATGTTGGAGCATGGGTGGATGCAAACCCTCGCCTTAAAGTTGCACAGAGGTCCCTAGTGGCACAGAATCTAGCAGTTGCCGCATCTGCCCTGATTCTCCTTCTTATCCTCTCCGTCAAGTTATTCCATGGCTTATTTGTGCTTCTTGTCGGCCTAGCAATATTTGTGGCCTGCTTTTCTGTGCTGGCTGGTATTGCAACTAAAATTGCTGTTCAGAAAGACTGGGTTGTTGTCATATGCCAAGGCGATAAATCTCTTCTTGCAGGTACCAATGCCATAATGCGGCGAATTGACCTCGTCTGTAAGATCTTGGCACCAGCACTCGTAGGGCAGGTCATGACTTACGTGTCCAAATCAGCCGGCGTCATCCTTATCGCCTCATGGAACGTTTTATCAGTCTTTGTTGAATATTTTATGCTGTTGAGGGTATACCACTCAGTACCATCCTTGGCCCACAAGAAAATTGACAAGAAACTTACCCAACAAGAAAATCCTCAAGAATCGCAGGAAGAAATACGGGGATCTAGGGATAGGCTAGTCTTTATGGAGACTGAGGGAGGGGACTCTGAGGCTTTGGTCTCACGTCCCGGATCAGCCTTGCCCCAAAGCCCTCAGACTTCCCGTCCTAAACCAGGTATTATACAGCGCCTAAAGACCAGGATCACCACCACCAAGTCAGTGTGGCAGGTGTACATGCGCCAGGAGGTCGCGCGACCGGGTGTTGCCCTTGCAATTCTGTATTTTACAGTCATAAGCTTTGGATCTGTTACCACTGGCTATCTCTATACACAGAATCTCAGTGAGTCTCTACTTAGTATTCTTAGAGGTGTTGGCGCGCTGTTTGGAATTGCTGCCACTTTCGTGTTTCCGAAGCTAAGAGACTCTATTGGACTTGTGCGCTCGGGGTTGTTTTCAATGTCTGCGCAGTTCATTTGCGTATTGTTATGCTTGGGTGCTGTACTCGCGCCAGGATCCCCATTTGAGTTGCTTCCTGATAGCTGGCGTTACCATGGTAATGTCATCGCGCGTAACACGTCAACGACTGTTGCCATTGGCAACTGTACTTTGAGTGGGTATACTTTTACCCGTCATCCACGTTTCAACCTTGATTTAGAACTCAATGCCACAGGAGCAGAATCAATTGGTcttgaatacaatacaacTGTCGGGGTATCTAccatcctcccctccccgTATAGCCTCGAGACCACCGATTTTGTCTCTATAACCCCTCATTTGTATACGTCCGCTACTAAATTGCCTACCGACGCAACTATAGCGTCCTCAACTTTTGCCGCCATCTTTACGCCTTCACCAACCATCCTTGCCTCGGCAACTCTGTCAAGCTTGCACCCCTCAAACAGCTCATTCCCTAACAACTGCACATCCTACACCAAGCACACGGTCGTCAAATCCTACAACTTCTCGTACGTCTCCGTGATTTTGCTCCTCAGCGGGATCATTACGTCACGGTTCGGTCTGTGGCTGACTGATCTCACCGTCACGCAGCTACAACAGGAAATAGTTGCTGAGGAGGAAAGGGGACGCGTGGGGGCCGTCCAGAAGTCTCTGTGTTCAATGCTAGACATGGCCATTTACGTGTTAGTTATCTCGCTTCCTCTCCCGGAGCAGTTCGGCTACATGGCCATCATATCTGTGGCCGCTGTCGGATTCGCCGGGATCCTGTATGCCTCGTTTTCGTACAAAGTGCGCGGTCATTTGTTTCACCTTGAGAAGGTCAAAGGTTGTGGTTATCGGAGAAAGCATCCCACGGTTTCGCGGTCACCGGAAGTTTTGTCTGCGTCACGTGATAGCTTAGGTAGGGAAAGGCAGGACGAAAatgctggtgatgatgatgaaaaagaTATGCTACAAGGTGTGATGTCAACCAGAAATGAGAATTTCAAATTCTGAATGTGTTGCAGACGAACTAATCACCGATATTAGTTATCCAACAAAGCGAGCTACGTTAATGGGCCACTTTCACGGCCCTTTCTATGGTAGAATAGGAAAGCTCGAAAAACAGTCAAAATCATGCAAAATAACCAGAATACGTTTCAGTTGAATGTAGTATTGCGTGGTTTGAACTTGTAACATCGAGCGATCCAGGTTTCGATCCAGGCTACACGTTTACCGAAAGCATGTGAAGTAAACCAACTAGAAAATCACAAACAAGTTCCTTTTTTCGATTTtgtagatttaaaaaaagaaataaaataattgcaCCAAATTATAAACCAGAGCTGAAAACGATataaacactttttatttcaattttgacCACCCATATTATTCGAGCCAAAGTCAACTTTTTTTATGACGATGAGCCCCGTACGAACACTTCCAGCACACGAGGAAGTCGTACAAATTCCTTGTTATTGTAAAAACGTAGAAACTAAGATAAAAGTCATGCTTGTCGTAATTTCTCTACAGAGGCAGTAATAATAAAATGGATGGTCATAATTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I9R3	Solute carrier family 40 member 1 OS=Danio rerio OX=7955 GN=slc40a1 PE=1 SV=3
E2RFJ3	Ferroportin OS=Canis lupus familiaris OX=9615 GN=SLC40A1 PE=3 SV=3
Q9JHI9	Ferroportin OS=Mus musculus OX=10090 GN=Slc40a1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06963 all species →	FPN1	Ferroportin1 (FPN1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009716 all species →	Family	Ferroportin-1	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11660 all species →	SOLUTE CARRIER FAMILY 40 MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005381 all species →	Molecular Function	iron ion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034755 all species →	Biological Process	iron ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14685	SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241201.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

4.6Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.54	4.25
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.30	3.05
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.44	1.93
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.03	2.38
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.72	1.87
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.77	2.32
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.82	2.89
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.40	4.63
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.57	2.63
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.33	2.15
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.23	2.36
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.10	3.27
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.14	3.45
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.06	3.19
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.99	3.40
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.62	1.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.25
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.37
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.05
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.28
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.58
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.93
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.27
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.13
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.38
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.97
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.74
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.87
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.87
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.43
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.32
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.89
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.56
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.63
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.85
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.72
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.63
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.08
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.15
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.84
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.36
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.35
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.27
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.03
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.45
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.26
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.70
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.19
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.40
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.57
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.85
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.