Genomic Location: NC_064035.1:17312044...17338458
NR annotation: XP_032241385.2, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5515770 |
| Transcript |
| rna-XM_032385494.2 |
| Protein |
| XP_032241385.2 |
| UniProt accession | Description |
|---|---|
| Q9Z1B3 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Mus musculus OX=10090 GN=Plcb1 PE=1 SV=2 |
| P10894 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus OX=9913 GN=PLCB1 PE=1 SV=1 |
| P10687 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Rattus norvegicus OX=10116 GN=Plcb1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001154 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17787 all species → | PH_14 | PH domain | Domain | Interproscan |
| PF09279 all species → | EF-hand_like | Phosphoinositide-specific phospholipase C, efhand-like | Domain | Interproscan |
| PF00387 all species → | PI-PLC-Y | Phosphatidylinositol-specific phospholipase C, Y domain | Family | Interproscan |
| PF06631 all species → | DUF1154 | Protein of unknown function (DUF1154) | Family | Interproscan |
| PF00388 all species → | PI-PLC-X | Phosphatidylinositol-specific phospholipase C, X domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037862 all species → | Domain | PLC-beta, PH domain | Interproscan |
| IPR015359 all species → | Domain | Phosphoinositide-specific phospholipase C, EF-hand-like domain | Interproscan |
| IPR042531 all species → | Homologous_superfamily | Phospholipase C-beta, C-terminal domain superfamily | Interproscan |
| IPR001711 all species → | Domain | Phospholipase C, phosphatidylinositol-specific, Y domain | Interproscan |
| IPR000909 all species → | Domain | Phosphatidylinositol-specific phospholipase C, X domain | Interproscan |
| IPR017946 all species → | Homologous_superfamily | PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily | Interproscan |
| IPR016280 all species → | Family | Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta | Interproscan |
| IPR001192 all species → | Family | Phosphoinositide phospholipase C family | Interproscan |
| IPR009535 all species → | Conserved_site | Phospholipase C-beta, conserved site | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10336 all species → | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004435 all species → | Molecular Function | phosphatidylinositol phospholipase C activity | Interproscan |
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| GO:0008081 all species → | Molecular Function | phosphoric diester hydrolase activity | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0048015 all species → | Biological Process | phosphatidylinositol-mediated signaling | Interproscan |
| GO:0051209 all species → | Biological Process | release of sequestered calcium ion into cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05858 | PLCB; phosphatidylinositol phospholipase C, beta | EC:3.1.4.11 | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_032241385.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
