Detailed information of XP_032241408.2 in Nematostella vectensis

Genomic Location: NC_064035.1:17102672...17113065
NR annotation: XP_032241408.2, mucin-19 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5XKL5BTB/POZ domain-containing protein 8 OS=Homo sapiens OX=9606 GN=BTBD8 PE=1 SV=3
D4A0X3BTB/POZ domain-containing protein 8 OS=Rattus norvegicus OX=10116 GN=Btbd8 PE=1 SV=4
D3YUB6BTB/POZ domain-containing protein 8 OS=Mus musculus OX=10090 GN=Btbd8 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007331 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00651
all species →
BTBBTB/POZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011333
all species →
Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR000210
all species →
DomainBTB/POZ domainInterproscan
IPR043225
all species →
DomainBTBD8, BACK domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22427
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032241408.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241408.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
0TPM > 0
16Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 144hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 0hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 2hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate uncut 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 4hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 120hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 36hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 24hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 20hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 72hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 60hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 48hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 8hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 12hpa 3 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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