Gene detail

Detailed information of XP_032241430.2 in Nematostella vectensis

Genomic Location: NC_064035.1:16933530...16941160
NR annotation: XP_032241430.2, inositol hexakisphosphate kinase 3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385539.2

TGCTAAGAATAATACCATTCTGCTTGATGacagcaacaaaaatatcCCGCTCCGTGTCACGCATTACGCGTTTGGTCTAACCTTCGTAATGACGTCACCATCGAAGTCACAGCCATTTACAAACTTTGTGTTGTGATAGTTTTAAGCCATAGGACTGGGGGATAATTTTGCCTCAAATCGCCGAGCGTGAACATTGAAACCAAAGAACATCACGTAAAGGGAATTGATCGTACAGAAATCCGGCGAATTTCTTGGTTATTAGTTACAAGTTTTGCGAATACGTGTTTGATTACCATCTTCTCAAACTCACTTGCAGGCACGCATGCATGTTGTGCCCTCAAAGCGAAAGAGGGATTGCTTCAACAGATCATTCCAAATCTCGTCCAAATGCAGAGTGAGACTGTATTGGACTCTGACCCTCTGAAATGCGGAGACAGTACCGAATCAGGATCTCGGGTGCTGGAACCGTACAATAATCAAGTTGGTGGTCGATCGTTGATTCTAAATTACGACCGCTCGACGCTTTGCAAACCGATGATTCCACAAGAAAGACAGTTCTATGAAGATCTCCCCTCACAACTTCTGTCTTTTACTCCGAAGTATAAAGGGGTTATTCATGTCGGGTGCCATACACGCGAGGATGGTCAAATTCAACTTGTAGCATACCCCAAGAATAGTTCTGTGAATTTACCAGATTTGAATAGTAACAATAGTTTTATGAAAACAGTACGATTTATAAGTGAGCATGAAAGCGATGAAGACATAGCGAATATTCATGCAAAGGGCCCCTTGACTATGGAAACACCAGCTACAACTGTAAATCCCTGGACATTTCACTGCCAGTACTTGCACCTTCAAAGGCTCCATGAGTCCTGGCAAGCTGAGAACAAGCTACAAGaatttatacTTATGGAAAATATAGCAAGAGACATTGCACACCCATCCATTATGGACCTGAAAATGGGTAATGAAGGCCATAGTGATTACTCTGATGAGGAGAAACAAGAGCGACAAAGAGCAAAATGTGATGCATCGACATCTAAATCCCTAGGAGTGAGGATAGCTGGCATGCAGGTGTATAAACCTGCTCTCCAGAAGTACACATACCGCAACAAGTACTATGGGTTCGACCTGACCAAAGAAGGATTTAAAGAAGAGCTTTTACAGTTTGTTCATGATGGGCATAGAGTAAGGAAAGAGCTGCTTCCTTTCTTCATAGAGAAACTTCAGCTACTTTATAGGTCTATTGATTCACTGGATGGATCACGGTTCTATTCAAGCTCCTTGTTGCTCATTTATGACAGCACTGTTCAAAATGGTGGTCTGAATGGAAGTACAGCACTAAATGATAGTTATTCTAATGAGTTTAAGGTTGATATTCGCATGATTGATTTTGGACGCTCCTTTCACCAAGGAACCAAAAGGCAAAATACAACAGGCCCCGATAGGGGATACCTTTTAGGAATTGAAAGTTTGATCAAACTTTTCAGCGAGATAGCCCTTGAAGGAAATAATAGAtgaatgtttttaaatttttctaTAGAATTTTAATGTGCATCTTTTGCATTGACTTTTTGTACATGATCTGAACTATGTAAGGAACGTAAGATCAGGAGTTGCAATAAAGGTGTCTAGAACATCCATACCTGCCAACTCTCCCAGTTTTCACGGAAGACTCCCGTTTTTTAGCTTTCATCTTCTGGCAAAAAAGTCGAAACTTcctatacatttactgtaatcTCCCAGGAAAATTCCCCGATAAATTTGTATACAGTTTTTGTATTTGAAGCACAATCTCCCGGTTTTTGTGCTTTTAAGGTTGGCAAGTATCAACATCAGAAAGTCAAGCAACCTTGTAAACAGGAAAAGGTTCTCTTCTGGTTATGTTCCTTACCGGAATACACACATCAGCTAAGTTTTGCAGAGTATCTGctaatatttttatacaaaaatattGAGGGCAATACTTTCACCCCCTCAAAATATTGCCTCCTAACTAGTCATCAACATAATGTgttacagtggaacctggagtCTACGATAACCTTGATTTTATGATGGCATTATTCCTTTCTACCGgtggaaatacagtgaaatgtataagaaattacctcaATCTAACGATACTGGATACAACAGTATTCTCAATTTTATGATACAAATCTGTTACATACAAATCCCAAGCGTAATTTTGACCTCAATACAACGATTTTACTGATGTCTAtcaacaaagagagaaaaactcaccacacacatacagtacagtTAACGATTTTTTGACTTGACAGATCTTATTAAAGGCAGATTTACAGTCTTACAGAAAATAACTGTACAGTCTTACACAGAGTAAAGTAACAATATTATTGTTTagtaaaaattaataattaaacCGACCTTGCTATAAtgatattttcaatggattttcCTTGATATCGTAAACTCTAGGACCTCGTTGCAACGATACCTCCATTtaacgatacattttctttctcccgagGCATATTATAAAATctaggttccactgtattgcAATGCCTTTGCCATTTGAGGTACATCCTTATGCTAATAATACTATCTGATGAtgtatttaattatttatttgtaattaaaataaaaaataacatttatgAATAGAATCATTTTATAtgtgaatataaaaaaatactctcAATCTACATTGCATTAAAATACTGTGTGAGCTGGTAAGTATTCAATTTAATAATAGTTAAATTAATCCATTTTGATAGGAAAAAAACTACttttgaataaaatatgctAATGCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BWD2	Inositol hexakisphosphate kinase 3 OS=Mus musculus OX=10090 GN=Ip6k3 PE=2 SV=1
Q6PD10	Inositol hexakisphosphate kinase 1 OS=Mus musculus OX=10090 GN=Ip6k1 PE=2 SV=1
Q9ESM0	Inositol hexakisphosphate kinase 1 OS=Rattus norvegicus OX=10116 GN=Ip6k1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03770 all species →	IPK	Inositol polyphosphate kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005522 all species →	Family	Inositol polyphosphate kinase	Interproscan
IPR038286 all species →	Homologous_superfamily	Inositol polyphosphate kinase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12400 all species →	INOSITOL POLYPHOSPHATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000828 all species →	Molecular Function	inositol hexakisphosphate kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0032958 all species →	Biological Process	inositol phosphate biosynthetic process	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032241430.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241430.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

31.0Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.90	11.58
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.30	13.17
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.73	12.97
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.48	13.40
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.19	10.41
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	3.26	9.77
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	12.31	17.77
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	12.29	13.98
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.96	13.79
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	12.89	15.93
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	11.29	13.62
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	10.56	14.10
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.74	14.82
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	17.83	31.00
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.88	12.19
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.29	12.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.58
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.38
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.75
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.17
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.42
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.33
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.97
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.88
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.35
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.40
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.85
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.19
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.41
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.35
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.80
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.77
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.77
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.20
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.95
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.98
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.05
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.83
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.79
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.08
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.93
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.53
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.22
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.62
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.62
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.63
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.10
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.98
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.59
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.82
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.79
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.60
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	31.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.20
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.30
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.19
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	12.88
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.