Gene detail

Detailed information of XP_032241559.1 in Nematostella vectensis

Genomic Location: NC_064034.1:13246300...13249862
NR annotation: XP_032241559.1, ectonucleoside triphosphate diphosphohydrolase 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385668.2

gggggtgggtgttAGGTGGATAGATGATCTGGAAGGGAGGAAAATGTTGAACATAAATGATGGCGTGGAATGGCAAGACTGGGGATGACAAAAACGAGTATATAGAGTTACAAAATGGAAAGGTGGGATATTTCTTAGAGCTCTTCGAAATGTAAAGCAACCTTACGTGTATTCTAGCACAAggtttatcatcaggaggtaagaccaggtactagtcaaatgcgaaGGGGAGAAATAAAACTGGGAGCCGAGGGATGCTAGGGGGTGGGTGGAAAGATGGAGAAGGTCTAGTGAGAAAGGAGTTCGCATTTGAGAAGTGTTTCAAAGTGAATGATAGGCTAGCCAATTTACCTTACCCCAGGAAAGGAAGCAAGTGACTATATAGGTAGCAtgtaggagggggggggaggaagtcTTCGTATTTTTAAAGAACAGGATGGGGGTCAGTGCTTAACTTGGAGAGGTGGTCCTAcataattttttattatttgaagctcgttccccccccctcccctcctgaTTATTATTGCACAGTCCCAAAGTCAGAcgtttttgtagccaaatccgataataaaCGTCCTGTAGACTGGTAGAATACTGCAATGGCATGGCTACGATGGTGGCTATCTCCACTCCATAAAGAGATAATGTTAAGGCTCCGATTAGAGCAATGGCAGAAGGCGGAAAACTATAGCGAAAACGCAATAACATGTCAACACAAGTATGCCGGCAGCGTTAGCTGCCATTGTTCCAAGAATGTTTgcaaaagacaacaacaagggAGTACAAATACAACAACTCCCTCGGGGTCAAAAGCTTTAGTGTAAAAACAGGTGTTGTGTACGAGGTTTGGGACGCATGAAGACATTAACTTTGTTCgtaaaacaaaagacaataGTTATCCATGTGCCATCTTGTGATGTTATATTAATACTCTGTTGGATTTTACGGCGTCTTGTTGCCATAGTTGGAGTACTTAAGCCGGTACTCCTTCTCGCTCATAGCCACACTGCTTCATCCTTCTGCGGTAGAGTTACAGatTTAACCTCAAGGACAGGTTAGCACCATGAAGTTTAGTACCACGTGGCTGCTTCTGGTATTTCTCGGGACATGTCTCGCCTTGGTCAGCGCGCGCACAATTCCAAAAGCAAAGTACGCTGTCCTGTTCGACGCGGGCTCAAGCGGGACCCGCTGTAAAGTGTACAAACTAATTCAACGCCAAACTCTACACGTACGGGACGTAACGCAACTCAACGTGCCTAAACCAAATAAAGCAAAGCCTGGACTCAGTAGCTTCGGTGAGAGCCCTGCCGGGGTCGGTCCTTATTTGCAGACTCTGATTGAGGGCGCTAAGAAAGTTGTCCCTGTTCAGTACCAGGCCCAGACCCCCGTGTATTTGTTTGCTACCGCGGGCATGCGTCTTCTCCCGGTCGACCAGAAAATCGCTGTCATAAATGAAGTGAACAACTTTCTACGTGATTCGAAAAAGTCTCCATTCGCGTTTAAGAAGGGTAATGCAAAGGTAATCAGCGGAATTGACGAAGCCACTTATGACTGGGTGACAGTAAACTTTCTGATGGGCGCGTTGACCGGGGAGTCAGACACCGAGTACGGAGTACTAGACATGGGTGGAGCATCGACTCAGAATGCCTTCGACACAAACAACACACAGCATATCACTGTCGTGCTAGACTTGACAAAGGGAATGCTCCCACTTTACGCACACAGTTACTTGGGGTACGGGGAGCAAGAGGCCCGCAAAAGGTTCATAAGATTCTTGGTGAATAACCGAAGGCATAACCGTAAAGTAATTACTAATCCTTGCTACAACTCTAACTTTGAGAAAAGAGTCGAAGTCGATGGCGCCGAGTATCTGATGAGAGGAGGGTTCAACCCTCAAATGTGCCATATGATTATCAAGAGCCTCTTTTTCTGTTTATCAAGCAAGAAGGACAATTGCCCATTCCACCAGCAGCCACGCTTGAAAGGCAAATTCTACAGTTTTAGTTTATTCACGTATGCTTTCCGAGAGACCGGAGTGGTGTCGAAAAATGGTGAGAGAATTGACATGGAGACTCTGAAGCGTAAGATGTTGTCGTTCTGTGGTCGTGATCTGACGGAGAAAGAGCTAGCAAATAAATACACGACCCCGAGATGTTTCCAACTGAACTTCATCTACAGCATGCTTACCGACGGCTATCGTGTCGACAACTCCTTTGAGCTCTACAATGGCGAAAGCATCAACGGACTCGATCTTAATTGGACCCTGGGTGCGATGCTTAGCGCGCTTAAGGTGCTATAGATAGAAGGGAAGACTGACTCAGTCAGTCTTTTCAGTTCAGCTATCTGAGAAGTGAAGACAGAGGGAAAACGATGTTTAGTGAGAAAGTTAATAAAGAACTTCAGAGCATTAATAATACATGTATGGTGTCACTTAAATGAGGAAATCATTTAAAACTGTTCAATAGGCTTATGCACAAATTAAAACACAGAATAGACTTGATGTCCTAGGATACTCTATAATGACGTTAGCAAAACTTCTTGGCCCAGATGATAGATTGATTGCAAGGAGATTGAAATAGGGTTCTATTATACGTTATAAATTTTGCTAAGTAGTAAAAGAGAAAGTGAGTGCAATTGCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18956	Ectonucleoside triphosphate diphosphohydrolase 1 OS=Bos taurus OX=9913 GN=ENTPD1 PE=1 SV=1
Q21815	Nucleoside-diphosphatase mig-23 OS=Caenorhabditis elegans OX=6239 GN=mig-23 PE=1 SV=2
P49961	Ectonucleoside triphosphate diphosphohydrolase 1 OS=Homo sapiens OX=9606 GN=ENTPD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001770 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01150 all species →	GDA1_CD39	GDA1/CD39 (nucleoside phosphatase) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000407 all species →	Family	Nucleoside phosphatase GDA1/CD39	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11782 all species →	ADENOSINE/GUANOSINE DIPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004382 all species →	Molecular Function	GDP phosphatase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006256 all species →	Biological Process	UDP catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0045134 all species →	Molecular Function	UDP phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032241559.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241559.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

8.4Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	3.79	4.47
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.00	3.25
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.94	4.40
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.02	3.31
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.61	3.49
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.21	3.62
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.22	3.42
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.30	3.65
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.88	3.01
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.74	2.99
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.61	2.79
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.19	3.46
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.55	4.50
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.30	3.91
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.84	4.41
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	3.60	8.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.47
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.58
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.33
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.25
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.95
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.82
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.40
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.83
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.59
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.31
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.14
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.60
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.46
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.87
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.62
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.42
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.23
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.65
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.51
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.73
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.01
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.64
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.99
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.24
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.79
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.59
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.45
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.46
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.11
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.50
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.38
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.76
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.91
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.41
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.10
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.36
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.45
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.