Gene detail

Detailed information of XP_032241586.2 in Nematostella vectensis

Genomic Location: NC_064034.1:12666274...12674050
NR annotation: XP_032241586.2, polyadenylate-binding protein-interacting protein 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385695.2

GTGTTGTCACATTTCCGATTGCTACCTTTGACAAACTACCAGATACCCGTTTATCGTGAAATACTCAAATATCGCTTTCCTTTAACTACAATGCCTTTGTAACGCTGTACCTAGCTAGAAAAATGAGTGATAAACCCCATTCCCTTGGTCGTGGAATTTCCTCGAAAGACTACACGTCACCTTTGAGGAAACCGGGAGAACCTAGCCAaaatcaagatggcggcaaaGAGCCCATTGGCATTGAAAACGATTCTATTCCAACAAAAGGAACTTCTTCAAAGCTCAATGTCAATGCTGCAGAATTTGTGCCAGAAATGTTTAAGGCCCCTCAGTATGTGCCAACATCACAGGCCATGCCCCCTCCCCAGACGGAACAGGCCACGCCCTCTCCCCAGACAACTGGACCAGACCTTGAGGCAGTAACCTTCGTTAAGGATATATTGGACCAGCTGACAGAAAGTCCTGGAGAGTTTGAAAACTTGGTAGAAGATTTGGTGCTAGCATGGAAGGCAAGGGTTAACAATGATGAAACTCTGAATGAAATAGCGAGTGTTATTATGGAACAGtccATTTTAGAATCCAATTTTACCTACACAGGAGCGAGACTTTGTGATTTTATTGCGAATAATACAGATGACATCCCAACTGaaggaaagcagttcagaagtGTTTTTTTGACAAGATGCAAAGAAGAACATCGAAAAAGAGAGGCAATGCTAAAGAGCCCTTCAACAGTTCCAAGAGTACATGGCTTGGCCATGTTTTTAGCAGAGCTTTATAGCACATTTAGGGTTGATGGTGCTTCAGGTTCCAAAGCACAGTTTGGTCCATTGGGTCGAGCATTACTAGAGATGCTTGATTCACTAATTGAAAGTGGGACGGATGACTCTTTGCTTTACGCTGGGCGGATACTTAAGCTGACCGGCTATCTTCTTGATGACCCTAAAGATAACCAGAGTAGGGTTGATGGTATCTTCGAGAAAATTGGAACGCTGCTAGAATCATCATCACATGTGGGAGATTCCATAAAAAGATTCCTTTCATCTGTGGTAAGCCTCAGAAAGAATAATTGGGGGCGGGAGAGCTTTGCAGAACGGGGAGCTGAAGCAGCAGCAGTTTCCGTGGCAACATCAGTCTTGTCTCCAGAGGCAGCGCCTTATGTTCCAGGGATTCAAAATTACCACTACTATAATAAGGAATACTACCAACCAGGGTTTATCTCAAATAACGAGGATGACATTACTCCAGTTACAAACCCCGAGCAATGGCTTGAGTATGCCGACTATGCCGATGACAGTAGTCCCACTGATTTGTCATGTCAGGTCTACGAAGATAACGGCCATGGCTACCCAGAAGAAGATGACTGTGCTTTCACGGAGGAGATGGAGAAGGATTACGAGCTGTTCATGTCCGAACAGCAGCCTCCGCTCCCGTTCAGCTAAATTTCTATCTCCGCACATCCCACATGGAATATATATTATAACAACGACATTAGGCAAACAGCTGGGCTGATTTCTACCCAAGACTAGGGCCTACCCCGTGTCGATgcggaaacaaaaaaaaaaaaaaaacaaagtaatATGATTTGAAGCCCATGGATAATAAAACGTTATAACTATTACTACATAGCTTGCGTAGTGTGCCTGAGAGGGAAAAAAGAGAGATGAACTTGGAGAAAGAGTATGCCTTACGTAGTATATAAGTAGAGTAACGCTAGTCTCGTCCCCACTACGGCTACGTCAGAAAAAGAGGGCCGCGCAGCCTAAAGGCACCTGGGGTCGAGGCTAGAAAAAGGGAATAAAGCTTGTCTCCTTCTCATTCCACTTTGCGCGCGGCAAACTTGGTGCGCAAGTTTGTTGGTAAAACGTCTTGGTAAAAGGTtgacgtgtttttttttttttaagtgttttgtaaatatatttttgtaaatgttttctcctaatctttttttttatctacaaGATCACTATTTGTACTACATTTCTGCAAACACATTTTGCTGCAAACAATTTTTCCAATTACATTGCCATTGTGAATCCAGATGGTCTAGATCAGGATCAACCCAACTGTTGCCTCGTGTCTTTGAGGTTGTGTTAATAATCTAATAAACATGCACTGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZYB4	Polyadenylate-binding protein-interacting protein 1 OS=Xenopus laevis OX=8355 GN=paip1 PE=1 SV=1
Q8VE62	Polyadenylate-binding protein-interacting protein 1 OS=Mus musculus OX=10090 GN=Paip1 PE=1 SV=1
Q9H074	Polyadenylate-binding protein-interacting protein 1 OS=Homo sapiens OX=9606 GN=PAIP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004779 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07145 all species →	PAM2	Ataxin-2 C-terminal region	Motif	Interproscan
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051367 all species →	Family	mRNA Translation Regulation/Replication-dependent Histone mRNA Translation	Interproscan
IPR009818 all species →	Domain	Ataxin-2, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23254 all species →	EIF4G DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006446 all species →	Biological Process	regulation of translational initiation	Interproscan
GO:0008494 all species →	Molecular Function	translation activator activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14322	PAIP1; polyadenylate-binding protein-interacting protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241586.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

58.9Max TPM

27.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	28.81	33.08
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	21.78	27.15
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	16.97	17.83
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	20.28	23.37
whole 6 week old aboral regenerate · regenerate uncut	3	3	17.64	18.60
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	16.04	26.58
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	17.96	28.28
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	37.02	42.87
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	37.39	43.31
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	42.74	50.14
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	35.35	45.35
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	18.64	30.19
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	31.33	32.67
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	41.12	58.90
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	18.93	29.28
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	30.59	35.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	33.08
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	29.24
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	24.10
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	27.15
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	20.88
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.32
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.83
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.73
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.35
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	23.37
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.75
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	18.60
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	18.10
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.21
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	26.58
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	21.55
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	28.28
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	25.60
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	42.87
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	36.70
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	31.50
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	43.31
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	37.34
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	31.50
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	50.14
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	40.07
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	38.02
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	45.35
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	31.62
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	29.10
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	30.19
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	25.73
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	32.67
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	31.46
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	29.85
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	58.90
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	37.78
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	26.68
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	29.28
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	27.51
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	35.30
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	32.76
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	23.71

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.