Gene detail

Detailed information of XP_032241755.2 in Nematostella vectensis

Genomic Location: NC_064037.1:970959...984825
NR annotation: XP_032241755.2, arginine/serine-rich coiled-coil protein 2 isoform X6 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385864.2

ATTGCGACAGCCAAGGtattgggtaccctgtgtagATTTGGATGATACATCCGGGGATCGTTATCCAAGATGGAGGGACTCACTGGTTACACATCAAGTTCGTCAGAAGACGGCGAAAAACACCCCAAATCCGCTCCAAACCAGACCACCTCAGGTATGGAATCAAGGCCAAATCCAATGTCGTTAGGCCCTGATGGGGATGTGTCAAAGAGGCTGAGAGCTGACGATGATGCATCCTCCGCTCCAGTGGTCACCAAAAAGACAAGAAGTGAAGAAAGCAATGATAACCACAGACAAATACATGAAGACTCCAGCCCTGGCCGGGATAGAAGCCCAGGATCTGACAGCCATCATGAAGAACCCCGAGAGGATGAGTTTGGTCGGGACCCCCCAGCATCCCATCGCCAGGAAGAAGACTCTAAACGCCGATCTTCAGTCGATAGACGGCCGAGGTCAAGCCGAGAATCACCCGAACGGAAACGGCCGTCTAGCCTTGGTCGAGACTCTTCCGAGCGCAGACCGTCTGCTCGTGTCTCTTCCGATAATTCGCGATCCCCTCCACATAGACGTGACAGCAGTAGACGCTCGCACTCGCCTTCCAGACGCTCTAGCGACGACCGATCGACTGATGCGAGAGATCGACGTGATCGAAGAAGGAGCTCGTCTCGGGAGAGAAGACCGCCTCGAGACCGTGACCGTGACCGTGATCGTGATCGGGACCGATATGACCGTGATCGTGGAAGGCGTGACAGCGATCGCGATCGCTATGACCGTGACAGGGGACGGCGTGACGGTGACCGCGACCGCTACCGTGATGACAGGAGGGGAAGGCGTGACAGATTCCGACGTTCACCTGGGCCGTGCACACCTGTGGTCAAAACCCCAGCTGTTCCCGTTCGCGCGCCCACATCAGAAGAGGTCCAAGCGAAACTAGCGGCGCACGCAGAGGTCTTGCGCCAACAGGCTCAGACCCAGGCCAAAGCAATCAACATGCCCGGCTACCTGAACCCTGCGGTGGTCAACCCTCAGCAGTACAAAGTGCAGCAGGAGAAGAAGAAGTTGTTATGGAGCGGCAAGAAAAAAGAGGCAGCTGCTCCCCCAGGTCAGTGGAGCGCGGCAAGCTACACCTCCGAGATGGACCCCAAGTTCCGCCGACTGATGGGTATCAAGGGGGGAGAAGCGCAAGACTCTCAGCTAGAGAGTACTCCCGCAGCCGCCAAGCCTGAAGGCCAAGGTCAGAGCGAGCTCCTGCACAACCTTGAGATTGAGTTCGAACGATCACGTGCCTTTCAGCTGTCGCGAGGTGCTGGCGGAAAAAGCGGCATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACTTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACTTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCGGTATACCTTATAGGGCTCGGCTACCAAGGACCCAAGTTCCCATGATACCTTATGCTAGCggtataccttataaggatcGGCTACCAAGTTCCCATGATACATTATGCTAGCGGTAAAAAGATATATGATTCTGTTCCGAGCGACCCAAGCCTCCATGATTCTTGATGTCATGGTGCAGACCAGTATAGCAGGTTAAGACTTCATTTCCAGGGGCCTAATTTCCCATGATGCCATGTTGCTAAGTGGTGCCGTCGGAACAGCGCAGCTTACTGTTCCCAAGGACCCCATTTCGCAAGGACCCCTATTCCTAAGGACCCCATTTCGCAAGGACCCCTATTCCCAAGGACCCCAATTTGCAAAGGTCCCAATTCCCAAGGACCCCATTTCGCAAGGACCCCAATTCCCAAGGACCCCATTTTGCAAGGACCCCTATTCCCAAGGACCCCATTTCGCAAGGACCCCTATTCCCAAGGGCCCCAATTCGCAAGGACCCCTATTCCCAAGGACCCATTTCGCAAGGACCCCTATTCCCAAGGACCCCAATTCCCAAGGACCCCAATTCGCAAGGACCTCAATTCCCAAGGACCTCAATTCCCAAGGACCCCAATTCACAAGGACCCCATTTCGCAAGTACCCCTATTCCCAAGGACCCCCATTCGCACTGACCCCATTTCCCAAGGACCCCAACTCGCAAGGACCCCAATTCCCAAGGACCCCAACTGGCATGGACCCCATTTCCCAAGGACCCCAATTCGCACGGACCCCAATTCGCAAGGACCCCAACTCGCAATGCCGTATGCCCCCGAACTCCCTTGTTGCCTCGCTTTTTGACGGGGCTATTACACCCCTTGGTGAGGAAATGCAATCGCACTGATTGATTACAAGTGTTTTTTTACACTCGTTACCTGTCACAATGCcgcgagtttttttttcttctaatttTCTGTTATGGATAGAATAGTCTTGTCTACTTTCTGGATTCCTTTTTAAATTGtatcttatttatttaaaatgcCCCTGACACTGTTATAACTACCAGGAGAGTAGAGAGGGAGGAAGTAAATATTGAGCAAGTGGAAAAGTACTATTTTATTCGGTGTTTAGGTACTGAATAAATATATATCCATAGTTTTCTAAGCACGCTTATACTTAGAAAGATCAATAAAATATCAGTGTGTTATTAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005131 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15477 all species →	SMAP	Small acidic protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028124 all species →	Domain	Small acidic protein-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22426 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032241755.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24595	RSRC2; arginine/serine-rich coiled-coil protein 2	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241755.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

16.5Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	7.71	9.74
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.52	9.39
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.42	7.01
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.99	8.20
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.95	6.94
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	9.00	12.34
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	6.71	9.09
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.85	11.18
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	8.56	9.67
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.28	6.98
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.25	7.84
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	11.05	16.46
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.24	8.57
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	8.91	12.30
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	7.10	7.97
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	4.95	7.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.74
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.27
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.11
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.39
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.58
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.60
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.01
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.56
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.69
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.20
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.59
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.19
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.94
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.79
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.12
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.34
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.52
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.13
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.09
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.66
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.37
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.18
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.39
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.97
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.67
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.58
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.41
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.98
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.79
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.08
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.84
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.25
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.66
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.46
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.70
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.57
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.47
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.69
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.30
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.75
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.68
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.97
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.49
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.83
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.95
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.95
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.96

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.