Genomic Location: NC_064035.1:20422361...20426766
NR annotation: XP_032241823.2, citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516166 |
| Transcript |
| rna-XM_032385932.2 |
| Protein |
| XP_032241823.2 |
| UniProt accession | Description |
|---|---|
| A8MUP2 | Citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial OS=Homo sapiens OX=9606 GN=CSKMT PE=1 SV=1 |
| Q5RCI5 | Citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial OS=Pongo abelii OX=9601 GN=CSKMT PE=2 SV=1 |
| Q501S4 | Citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial OS=Danio rerio OX=7955 GN=cskmt PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010642 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13847 all species → | Methyltransf_31 | Methyltransferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051419 all species → | Family | Lysine/N-terminal Methyltransferase Superfamily | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR025714 all species → | Domain | Methyltransferase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12176 all species → | SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN | Interproscan |
XP_032241823.2. This gene does have a gene model — the search simply returned no hit.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00614 | CSKMT, METTL12; citrate synthase lysine N-methyltransferase | EC:2.1.1.- | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of XP_032241823.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
