Genomic Location: NC_064037.1:15685398...15701166
NR annotation: XP_032241832.1, cytosolic arginine sensor for mTORC1 subunit 1 isoform X4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516139 |
| Transcript |
| rna-XM_032385941.2 |
| Protein |
| XP_032241832.1 |
| UniProt accession | Description |
|---|---|
| Q8WTX7 | Cytosolic arginine sensor for mTORC1 subunit 1 OS=Homo sapiens OX=9606 GN=CASTOR1 PE=1 SV=1 |
| Q0V8A3 | Cytosolic arginine sensor for mTORC1 subunit 1 OS=Bos taurus OX=9913 GN=CASTOR1 PE=2 SV=1 |
| Q5R9D1 | Cytosolic arginine sensor for mTORC1 subunit 1 OS=Pongo abelii OX=9601 GN=CASTOR1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004252 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13840 all species → | ACT_7 | ACT domain | Domain | Interproscan |
| PF18700 all species → | Castor1_N | Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain | Domain | Interproscan |
| PF21389 all species → | CASTOR1_ACT-like | Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026249 all species → | Family | CASTOR family | Interproscan |
| IPR027795 all species → | Domain | CASTOR, ACT domain | Interproscan |
| IPR051719 all species → | Family | Cytosolic arginine sensor for mTORC1 | Interproscan |
| IPR040778 all species → | Domain | CASTOR1, N-terminal | Interproscan |
| IPR045865 all species → | Homologous_superfamily | ACT-like domain | Interproscan |
| IPR049479 all species → | Domain | Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31131 all species → | CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE | Interproscan |
XP_032241832.1 in Nematostella vectensis.XP_032241832.1.Transcript abundance of XP_032241832.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
